Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq45 178 1e-39 >seq45 Length=29048 Score = 178 bits (196), Expect = 1e-39 Identities = 498/749 (66%), Gaps = 29/749 (4%) Strand=Plus/Plus Query 13914 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13973 |||||||||| | ||||| ||||||||||| || |||||||||| ||||| ||| | Sbjct 19170 TTTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTGGAGTGAAATAAGAT 19229 Query 13974 CCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACA-ACCTAGTTCTAATAGT 14032 |||| |||| || ||||| | |||| | ||| | | | || | || || Sbjct 19230 CCATCCAATCGAAGGGATTAGAA-ACATTGTAAATTTTGGGGATATCCAGAGCAAAAAGG 19288 Query 14033 AATCTATCCGCAATGAACTCAATATATTGAGACATTAAATC-ACAATTCATACCTATTAG 14091 | |||||| || | || ||||||||||||| ||| || || | | ||||| || || || Sbjct 19289 AGTCTATCAGCTACAAATTCAATATATTGAGCCAT-AAGTCTAGAGTTCATTCCAATAAG 19347 Query 14092 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 14151 | ||||||| | | | ||| | | |||||| | ||||| || ||||| Sbjct 19348 ATCAACAGGAAGTGAGTCACAAAGAAAGTTTCTTTCTACATCAACAGCTTCTGAGATAAT 19407 Query 14152 AATCGTAATAATTTCATTAGAAGGAGG------ATATTTTAGATGTTTAAAAATTAAACA 14205 | || || | | ||||| || |||||| ||| ||| | ||||| || Sbjct 19408 --TTGTTGTACTCT----AGAAGTTGGTAGTTTATATTTAAGAGCTTTGTATATTAAGCA 19461 Query 14206 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 14265 ||||| ||| ||| | || ||||| | ||||||||||| || || ||||| | ||| Sbjct 19462 AGCAAAGTCAGCATGTAATCCTTCATCACGGCTAATAAGTTCATTAGAGAATGTAAGTCC 19521 Query 14266 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATA 14324 ||||| | ||| || ||||| | ||||||||| ||| | || | | || ||||| | | Sbjct 19522 AGGCATAAGTCCACGCTTTTTAAGCCAAAATATAGCA-CAAAAGCTACCAGAAAAAAGAA 19580 Query 14325 TTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATA 14384 |||| || || ||| || | || | || || |||| ||| || || ||| | Sbjct 19581 TTCCTTCTACAGCACAGAATCCAATAATTCTCTCAGCAAAAGATCTTTCATTATTC---A 19637 Query 14385 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAA 14444 ||||||| | |||||||| | ||| ||||||| | || |||||| | || Sbjct 19638 TCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATATGAGAAATAGCCTCAA 19697 Query 14445 ATA--AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14502 | | | | | |||| |||| | | | ||| ||| | ||||| | ||| ||| | Sbjct 19698 AAAGCATTTGACGTTCT-TTTATTTC-AGTAATATATCTGTCAATTAACAAGGAATATGT 19755 Query 14503 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14562 |||| || || | || ||||| || ||||| ||||| | ||| ||||||| Sbjct 19756 TTCATTATGAATTTGCTCAATAGCCATTTGAAATGCATAATACATTCTTGCTTCTGGGAT 19815 Query 14563 TTGTA--CCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCT 14620 |||| |||| || ||| | | ||||| ||||| |||| |||||||||||||| Sbjct 19816 ATGTATTTCTCTTAGGAAA--TTGACAGCCAAGTTTTCCATAACAATACCATCACTAGCA 19873 Query 14621 GCAAAAAATGCCAATATGTTTTTAATAAA 14649 ||||| || || | | || ||||||||| Sbjct 19874 GCAAAGAAAGCTAGGACGTATTTAATAAA 19902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482343935907680