Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq45 95.1 1e-14 >seq45 Length=29048 Score = 95.1 bits (104), Expect = 1e-14 Identities = 169/244 (69%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 57566 AGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGA 57625 ||| |||||| ||||| ||||| |||||||||||||||||| ||||| | || Sbjct 20014 AGATATTTGGTTTATGTATAAAAAAGCAGAAGCATCGTTTTGGGTTACTGAAGAGATTGA 19955 Query 57626 CCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAA 57685 | | | | ||| || |||||||| || ||||| |||||||| |||||||||| Sbjct 19954 CTTAAGTCAAGATACTAGAGATTGGGAAAGTCTTAAAGACCCTGAGAGACATTTTATTAA 19895 Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAG 57745 | |||| | || || || || || ||||||||||||| || || |||| | | Sbjct 19894 ATACGTCCTAGCTTTCTTTGCTGCTAGTGATGGTATTGTTATGGAAAACTTGGCTGTCA- 19836 Query 57746 ATTTTC-ACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 |||| | | |||| | || | | || || ||| | ||| | ||||||| |||| | Sbjct 19835 ATTTCCTAAGAGAAATACATATCCCAGAAGCAAGAATGTATTATGCATTTCAAATGGCTA 19776 Query 57805 TTGA 57808 |||| Sbjct 19775 TTGA 19772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764862105920