Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq97 363 1e-95 seq45 159 3e-34 >seq97 Length=14183 Score = 363 bits (402), Expect = 1e-95 Identities = 1011/1533 (66%), Gaps = 57/1533 (4%) Strand=Plus/Minus Query 37126 TGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTA 37185 || ||||| || || ||| || ||||| | ||| || | ||||||||| |||| Sbjct 9422 TGAGGATTCACTACAAAAAATTCACCAGAAAGTACCCTACGATGATATATATTTGAAGTA 9363 Query 37186 TATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGT 37245 ||||||||| || || |||| ||||||||| || ||||| |||||||||||||| Sbjct 9362 AATGGTTCAAAACTTTCGTTGTTACCTAATATTTGCGAGGTAGACGCAGTAGGCATTGGA 9303 Query 37246 GCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAA 37305 || |||||||| ||| | | |||| || ||| || | ||| ||| || ||| Sbjct 9302 GCAATTAGAAGTGAATTACGGAGCCCATACTTAGAAATCCTTTCTTTAAGTGAATCCCAG 9243 Query 37306 TCCCATA------AATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTA 37359 || || | |||| | | || | |||||| ||| ||||||||||||||||| Sbjct 9242 TCGCAAAGCCCAGAATCAG---GCTTAACTCCCCACATGTCAAATTGTAGAATACCTTTA 9186 Query 37360 CTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTA 37419 ||||| || || | ||| || ||||| || || | ||| || || ||||||||| Sbjct 9185 CTCGCGGGTGACCCAGAATACGTTTCATACGGCCCATCTTTTTCTGCGAGCTCGCAACTA 9126 Query 37420 GATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGC-TTC 37478 | || || || |||||||| || ||| ||||| | |||||||| | | || ||| Sbjct 9125 GCCTCGAGCGCCGCATAATAAATAACTTCAAAAATCTCCTTATTTAATTTCCTAGCCTTC 9066 Query 37479 TTCGCTATCGAATG-CATAGCCCAATAAT-ATAAACACATCAGCCAAACCCTGAACACCG 37536 | | | || ||| |||| | || || ||||| ||| || | || |||||||| Sbjct 9065 TCTGAT-TCATATGGCATA--CGAAGCATCATAAAGCAATCTGCAAGTCCTTGAACACCA 9009 Query 37537 ATACCTATGGGTCTATGTTTCTTATTAGA-TCTAGACGATTCTATCACTGGATAATAATT 37595 || || | || | |||||| ||| || | | || ||||| | | |||||| Sbjct 9008 ATTCCAAGCGGGCGATGTTTTAGATTTGAGTTTTTAC-ATTCTGGGAGAGAATAATATCC 8950 Query 37596 GATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTC 37655 | ||| | ||||| |||| ||| | | | | |||||| | | ||||| || Sbjct 8949 GTGATCAACAATTTTGTTTAAATTCCTCGTAATAACTCTCGTAACTTCCTTTAACTTATC 8890 Query 37656 GAACATAAATACGTTATTATT------AACAAATTTACTCAACGA--AATAGATCCTAGA 37707 || ||| || |||| |||||| || | || || ||| || | || Sbjct 8889 AAAGTCGAATGTTTTGTTATCTTTGTCAACAAACTT-CGGAA-GACCAATGGACGCCAGG 8832 Query 37708 TTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTC 37767 ||||| ||||||| ||||| | || || | | | |||||| || || || | |||||| Sbjct 8831 TTACAAACAGCAATTTCATTTGCGCTAGTGTACTCTATAATTTCGGTGCATAAATTACTG 8772 Query 37768 GATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGT 37827 || ||| || |||||||| | || || || |||| || || || || Sbjct 8771 GAAACAATAGTCCCCAAATTTTTCTGGTTACTCTTACTATTCGCAGCGTCCTTGTAGCAG 8712 Query 37828 ATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCT 37887 || | ||||||||| ||| |||||||| | | || | ||| || || ||| Sbjct 8711 ATGAAAGGCGTTCCTGTTTCAATTTGAGCTTGTAGGATTAAAAACCA--AAGTTTCTGC- 8655 Query 37888 TTAACGATCGCTTTAAtt-tttttCTT---------TG--TTTCGTATTCTATATATAAT 37935 || || || |||||||| || ||||||| ||| ||||| | Sbjct 8654 ---------GCCTTCATAGTTTTTCTTCCGCGGCCCTGCTTTTCGTACTCTTCATATAGT 8604 Query 37936 TTGTTAAAATCATTCCCCCATACATC--GCATAATCCTGGACATTCGCATGGACACATTA 37993 || ||||| |||| ||||| ||||| ||| |||| ||||| |||||||| | Sbjct 8603 TTCTTAAACTCATCACCCCAAACATCTTGCAACCCCCTG--CATTCATCCGGACACATAA 8546 Query 37994 GAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAG 38053 ||| ||| |||| ||||| || || | |||||||||| |||||| ||||| | |||| Sbjct 8545 GAGTCCAATCTTGGTCTTTCTCAACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAG 8486 Query 38054 TAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAAT 38113 ||| | || | ||| || || || || ||||||||||| | ||| | Sbjct 8485 GAAAGAGGTCACGGCATCTCATCTCCTCTTTTCCATGATTCTTTCTTATTTCAATAAACT 8426 Query 38114 CGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCAC 38173 | | | ||| | ||||| || || | |||||| | || || || | ||| | | Sbjct 8425 CCACAACATCTACATGCCACGGCTCCAAATAAATTGCAATCGCACCCTTGCGTTTCCCTC 8366 Query 38174 CTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCAT 38233 | || || | |||||||||| | || | |||||| | | |||||| || | | |||| Sbjct 8365 CACCTTGGTCAATATATCTAGCAGTATCATTATAAACGCGTAACATTGGAATCAGTCCAT 8306 Query 38234 TAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACA 38293 |||| | || || |||| ||||| | ||| | ||| |||||||| | | || Sbjct 8305 TAGACCTTCCATTGGTACCCCGAATATACGAGCCCGTTCCTCTAATATTACTCACTGCCA 8246 Query 38294 ATCCTATTCCACCTGCATGTTTTGATATTAAA-GCGCATTGTTTTAACGTATCAAATATA 38352 ||| | || || ||| || || || || || |||| | ||| ||| ||||| ||| Sbjct 8245 CTCCAAGACCGCCGGCA-GTCTTACTAATATTTGCACATTTTGTTAGCGTGTCAAAAATA 8187 Query 38353 CCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGA 38412 || |||||| || || |||| |||| ||||||| ||||||||||| |||| Sbjct 8186 CCATCTATAGAATCCTCTGGTATTCTGAGTAAAAAACAAGATGACATTTGAGGTCTTGGA 8127 Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || |||| ||| || | ||||| | ||||| | || | |||| ||| || | ||| Sbjct 8126 GTGCCGGAGTTGAAAAGCGTAGGTGTAGCATGGGTAAAATACTTTTGCGATAATAATTTA 8067 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 |||||||| | | || | || |||||||||| || ||||| ||| || |||||||| Sbjct 8066 TATGTTTCGAGTGCAGCCTCGATATCACCGCAATGTATACCACAAGAAACTCTCATTAGA 8007 Query 38533 ATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAAT 38592 | |||||||||||| |||| || || |||| | | || ||||| || ||||||| Sbjct 8006 AGATGTTGTGGTCTCTCTACAATCTTGTTATCAATTCTGAGAAGATAGGACCTTTCTAAA 7947 Query 38593 GTTTTTATTCCAAAATAACTATATGAATAATCT 38625 ||||| | | |||||||| |||| | ||||| Sbjct 7946 GTTTTGAATGCAAAATAATCATATTCAAAATCT 7914 >seq45 Length=29048 Score = 159 bits (176), Expect = 3e-34 Identities = 564/860 (66%), Gaps = 32/860 (4%) Strand=Plus/Plus Query 11340 TTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACT 11399 |||||||||| | |||| ||| || ||||| || ||||||| ||||| ||| | Sbjct 19170 TTTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTGGAGTGAAATAAGAT 19229 Query 11400 CCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATA 11459 |||| | || |||||| | |||||| | | ||| | | | | | | Sbjct 19230 CCATCCAATCGAAGGGATTAGAAACATTGTAAATTTTGGGGATATCCAGAGCAAAAAGGA 19289 Query 11460 ATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGAT 11519 |||||| || || ||||| ||||| |||| ||| | | | | ||||| || ||||||| Sbjct 19290 GTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGTTCATTCCAATAAGAT 19349 Query 11520 CCACCGGAATAGCAACTGTCAAA--AACTCCTTTTCTATATTAACCGCATCAATGATTAT 11577 | || |||| | | | |||| || | |||||| || ||| || || ||| || Sbjct 19350 CAACAGGAAGTG--AGTCACAAAGAAAGTTTCTTTCTACATCAACAGCTTCTGAGATAAT 19407 Query 11578 CGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATG---TTTAAACATTAAACACGC 11634 ||| || || || |||| | | || | | ||| | ||||| || || Sbjct 19408 TT--GTTGTA-CTCTAGAAGTTGGTAGTTTATATTTAAGAGCTTTGTATATTAAGCAAGC 19464 Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694 ||| ||| |||||| ||||| || | || || ||||||||||| ||||| | ||| || Sbjct 19465 AAAGTCAGCATGTAATCCTTCATCACGGCTAATAAGTTCATTAGAGAATGTAAGTCCAGG 19524 Query 11695 CATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCC 11754 ||| | ||| || ||||| | ||||||||||||| ||| ||||||||| | ||||| Sbjct 19525 CATAAGTCCACGCTTTTTAAGCCAAAATATAGCACAAAAGCTACCAGAAAAAAGAATTCC 19584 Query 11755 CTCCACAGCTGCAAATGCTACTACTCTTTC-TCCATATACCTTGTTGCTAGATATCCATT 11813 || ||||| ||| | | | ||| || | | | | ||| | || ||||||| Sbjct 19585 TTCTACAGCACAGAATCCAATAATTCTCTCAGCAAAAGATCTT-TCATTATTCATCCATT 19643 Query 11814 TTCTGGCCCAATCAGCTTTCTTTTTTAC-GCATTCCATTGTTTCTATAGCGTTAAATAAA 11872 | | ||||| || ||||||||||| || ||| || ||||| | | ||| Sbjct 19644 TAGTTGCCCATTCTGCTTTCTTTTTAACTGCA-GAAATATGAGAAATAGCCTCA---AAA 19699 Query 11873 TGCATTT---TTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCT 11929 |||||| |||| | | || | | |||| | || ||||| || ||| |||| Sbjct 19700 AGCATTTGACGTTCTTTTATTTCAGTAATATATCTGTCAATTAACAAGGAATATGTTTCA 19759 Query 11930 GAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACA-TCGTGCCTCTGAACACTG 11988 |||||| | || ||||| ||||||||| |||| | ||| || ||| |||| || Sbjct 19760 TTATGAATTTGCTCAATAGCCATTTGAAATGCATA-ATACATTCTTGCTTCTGGGATATG 19818 Query 11989 TACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAA 12047 || || | | |||| | | || || || || | |||||||||||||||| |||| Sbjct 19819 TATTTCTCTTAGGAAAT-TGACAGCCAAGTTTTCCATAACAATACCATCACTAGCAGCAA 19877 Query 12048 AAAATGCTAGTATATGTTTTATAAAGTATTTTTC---GTCTTTAGTTAATTTATCCCAAT 12104 | || ||||| | | ||| ||||| | | | || ||||||| | | ||||||| Sbjct 19878 AGAAAGCTAGGACGTATTTAATAAAATGTCTCTCAGGGTCTTTA---AGACTTTCCCAAT 19934 Query 12105 CATCTA-AATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGT 12163 | |||| ||||| ||| || | |||||| |||||| ||| ||| || | Sbjct 19935 C-TCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAACCCAAAACGATGCTTCTGCTTTT 19993 Query 12164 TTATACATTTTCCAGATATC 12183 |||||||| ||| ||||| Sbjct 19994 TTATACATAAACCAAATATC 20013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468523183589440