Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016-
10-24] 276 sequences; 9,100,863 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq97 300 2e-76
seq45 167 3e-36
>seq97
Length=14183
Score = 300 bits (332), Expect = 2e-76
Identities = 1193/1855 (64%), Gaps = 38/1855 (2%)
Strand=Plus/Minus
Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777
|||||||| || ||| | |||| || || | |||||| || || || |||||||
Sbjct 9755 GTGAATTGTATTGGACGTGTTGCGCTTTGAGTTCTTAGATAATAAATGCCAGTTTTTAAT 9696
Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837
|| |||| || ||||||||||| | || || | | | | | || | | |||
Sbjct 9695 CCTTTTTTCCAGCCATAGAAATGCATCGATGATAACTTTGCAAAGTTAGCATTTTCCATA 9636
Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897
|| ||||| | ||| ||| || || | | ||||| ||||||||||| | ||
Sbjct 9635 TGAATATTTAAAGACTGAGACTGGCAAATATATGGGCCCCTATCTGCAGCCATATCGATT 9576
Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACT-CGCTTAATATCTTCTGGAAG 78956
| |||||||| ||| ||||||| |||||||||| | ||| | || | |||
Sbjct 9575 ACTGTCTTTTGCTTAATCTCCCAAACTGTTTTATAAAGTTCGCGGACGTCCTCCGGGATT 9516
Query 78957 GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014
|| | |||| ||||| |||| || ||| || || | | || | | |||| |
Sbjct 9515 GTAAGAATATTTTGAATACTTCCATTATTTGCAATGATATTTTGTTTAAGCCTGTCATCC 9456
Query 79015 CATAATTTTCTCTCGGTTAA--AACTC--TAAGGAGATGCGGATTAACTACTTGAAATTC 79070
|||| | | | | || || || | || | ||| ||||| ||||| ||||||
Sbjct 9455 CATAG----CCCAAGTTCAAGCAAGTCATTGAGTAAATGAGGATTCACTACAAAAAATTC 9400
Query 79071 TCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATT 79130
||||| | ||| || ||| || ||||| ||| ||||||| | ||| || ||
Sbjct 9399 ACCAGAAAGTACCCTACGATGATATATATTTGAAGTAAATGGTTCAAAACTTTCGTTGTT 9340
Query 79131 TCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAG 79190
|| || ||||| | || || || || ||||| || || | | | ||| | ||
Sbjct 9339 ACCTAATATTTGCGAGGTAGACGCAGTAGGCATTGGAGCAATTAGAAGTGAATTACGGAG 9280
Query 79191 ACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGAC---GGGAC 79247
|| || || | ||||| || || ||||| || ||||| |||| ||
Sbjct 9279 CCCATACTTAGAAATCCTTTCTTTAAGTGAATCCCAGTCGCAAAGCCCAGAATCAGGCTT 9220
Query 79248 AACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTC 79307
||| ||| | ||| ||||||||||||| ||||| ||| ||| || | || |||||
Sbjct 9219 AACTCCCCACATGTCAAATTGTAGAATACCTTTACTCGCGGGTGACCCAGAATACGTTTC 9160
Query 79308 ATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGT 79367
||| || || || ||||| || | || ||||| ||||| | || | ||||||||
Sbjct 9159 ATACGGCCCATCTTTTTCTGCGAGCTCGCAACTAGCCTCGAGCGCCGCATAATAAATAAC 9100
Query 79368 TTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGGCTATCAAATGG-ATAATTTAAG 79425
||| ||||||| |||||| | | | | ||||| | | ||| |||| ||| |||
Sbjct 9099 TTCAAAAATCTCCTTATTTAATTTCCTAGCCTTCTCTGAT-TCATATGGCATACG--AAG 9043
Query 79426 -AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 79484
| ||||| ||||| | ||||||||||||||| || | || | |||| | |||
Sbjct 9042 CATCATAAAGCAATCTGCAAGTCCTTGAACACCAATTCCAAGCGGGCGATGTTTTAGATT 8983
Query 79485 AGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCT 79544
|| ||| | |||||| | || |||||| ||| | |||||| || | ||||||
Sbjct 8982 TGAGTTTTTACATTCTGGGAGAGAATAATATCCGTGATCAACAATTTTGTTTAAATTCCT 8923
Query 79545 GACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCC---ATCTATTAC 79601
|| ||| | || ||||||| || ||| || ||| | |||| | |
Sbjct 8922 CGTAATAACTCTCGTAACTTCCTTTAACTTATCAAAGTCGAATGTTTTGTTATCTTTGTC 8863
Query 79602 AAACATGTTCA-ACG--CGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 79658
|| | ||| | | | | || ||||| |||||||| || | ||||| || |
Sbjct 8862 AACAAACTTCGGAAGACCAATGGACGCCAGGTTACAAACAGCAATTTCATTTGCGCTAGT 8803
Query 79659 ATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATT 79718
|| | ||| ||||| ||||| | ||||| | ||| || || ||||||| || ||
Sbjct 8802 GTACTCTATAATTTCGGTGCATAAATTACTGGAAACAATAGTCCCCAAATTTTTCTGGTT 8743
Query 79719 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGA 79778
|||||| | || || ||||| || ||||| || || || |||||||| ||||
Sbjct 8742 ACTCTTACTATTCGCAGCGTCCTTGTAGCAGATGAAAGGCGTTCCTGTTTCAATTTGAGC 8683
Query 79779 TTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGACTTGTATCT----CTTT 79833
|| || || ||| | | || | ||||| || || || || | |
Sbjct 8682 TTGTAGGATTAAAAACCAAA-GTTTCTGCGCCTTCAT---AGTTTTTCTTCCGCGGCCCT 8627
Query 79834 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCA 79893
|| ||||||| | | ||||| | | ||||| || ||||||||||| | || ||
Sbjct 8626 GCT-TTTCGTACTCTTCATATAGTTTCTTAAACTCATCACCCCAAACATCTTGCAACCCC 8568
Query 79894 GGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAG 79953
||||| || |||||||| | | ||| ||| || | || || | | ||||||
Sbjct 8567 CTGCATTCATCCGGACACATAAGAGTCCAATCTTGGTCTTTCTCAACCCTCTCCATAAAT 8508
Query 79954 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTA 80013
|||||||||| |||||| || ||| || || | | ||| |||||| ||||| |
Sbjct 8507 AGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGGCATCTCATCTCCTCTTTTCCATGA 8448
Query 80014 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 80073
|||||| | | || | ||| ||| || ||| ||||||||| ||||| || || ||
Sbjct 8447 TTCTTTCTTATTTCAATAAACTCCACAACATCTACATGCCACGGCTCCAAATAAATTGCA 8388
Query 80074 ATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 80133
|| | ||| ||||| ||| || || || || |||||||| || | |||||||||
Sbjct 8387 ATCGCACCCTTGCGTTTCCCTCCACCTTGGTCAATATATCTAGCAGTATCATTATAAACG 8328
Query 80134 CTCAACATTGGAATAATACCATTGGATGTACCATTGGT-CCCGGAGATATAGCTTCCACT 80192
| ||||||||||| | ||||| || | |||||||| ||| || ||||| || |
Sbjct 8327 CGTAACATTGGAATCAGTCCATTAGACCTTCCATTGGTACCCCGA-ATATACGAGCCCGT 8269
Query 80193 GGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 80252
| | ||||||||| | || | || | || || || | ||| || ||| ||
Sbjct 8268 TCCTCTAATATTACTCACTGCCACTCCAAGACCGCCGGCAGTCTTACTAATATTTGCACA 8209
Query 80253 TCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACA 80312
| | ||| ||| ||| | || || ||||| ||| || || | |||| ||||||
Sbjct 8208 TTTTGTTAGCGTGTCAAAAATACCATCTATAGAATCCTCTGGTATTCTGAGTAAAAAACA 8149
Query 80313 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 80372
|||||||| | | ||| || | || || | ||||| | ||| || |||||
Sbjct 8148 AGATGACATTTGAGGTCTTGGAGTGCCGGAGTTGAAAAGCGTAGGTGTAGCATGGGTAAA 8089
Query 80373 CCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAAT 80432
| |||| || | || || || || || | || | || ||||| | ||| ||
Sbjct 8088 ATACTTTTGCGATAATAATTTATATGTTTCGAGTGCAGCCTCGATATCACCGCAATGTAT 8029
Query 80433 TCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTT 80492
|| | || | ||||| | || || ||||| || || |||||||||| ||| |
Sbjct 8028 ACCACAAGAAACTCTCATTAGAAGATGTTGTGGTCTCTCTACAATCTTGTTATCAATTCT 7969
Query 80493 CAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 80547
| | || || |||| |||||||| || ||||||| | ||| ||| |||
Sbjct 7968 GAGAAGATAGGACCTTTCTAAAGTTTTGAATGCAAAATAATCATATTCAAAATCT 7914
>seq45
Length=29048
Score = 167 bits (184), Expect = 3e-36
Identities = 573/875 (65%), Gaps = 34/875 (4%)
Strand=Plus/Plus
Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715
||||||||| |||| ||||| || || | ||||| || ||||| ||||| ||||
Sbjct 19156 CATAACTCCAGCCATTTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTG 19215
Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 49775
| ||| ||| ||||| |||| || ||||| | |||||| |||||||| | |
Sbjct 19216 GAGTGAAATAAGATCCATCCAATCGAAGGGATTAGAAACATTGTAAATTTTGGGGATATC 19275
Query 49776 CAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 49835
|| || ||| | |||||| || |||||||| |||||| ||| | | | | ||
Sbjct 19276 CAGAGCAAAAAGGAGTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGTT 19335
Query 49836 CATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGC 49895
|||||| ||||| | ||| ||||| | || |||||| | | ||| | || ||
Sbjct 19336 CATTCCAATAAGATCAACAGGAAGTGAGTCACAAAGAAAGTTTCTTTCTACATCAACAGC 19395
Query 49896 ATCTGTTATAATAGATCTAACGGTTTCTTCAC-TCGGTGGATGCAATAAATG---TTTAA 49951
|||| ||||| | || ||| | | ||| | | || | | |||
Sbjct 19396 TTCTGAGATAATTTGTTGTAC----TCTAGAAGTTGGTAGTTTATATTTAAGAGCTTTGT 19451
Query 49952 ACATCAAACATGCGAAATC-GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010
| || || || || || || ||| || | || || || | ||||| ||||| || ||
Sbjct 19452 ATATTAAGCAAGCAAAGTCAGCA-TGTAATCCTTCATCACGGCTAATAAGTTCATTAGAG 19510
Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG-ACCC 50069
|| || ||||| ||||| || ||||||||||||||||||||||| | | |||| | ||
Sbjct 19511 AATGTAAGTCCAGGCATAAGTCCACGCTTTTTAAGCCAAAATATAG-CACAAAAGCTACC 19569
Query 50070 AGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT 50129
|||||| | ||||||||||| || || ||| || |||||| || || | ||
Sbjct 19570 AGAAAAAAGAATTCCTTCTACAGCACAGAATCCAATAATTCTCTCAGCAAAA---GATCT 19626
Query 50130 GTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 50186
|| || ||||| || ||||| || || |||||||| || || ||
Sbjct 19627 TTCATTATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATATGAGA 19686
Query 50187 TATGGCATTAAAGAG-AT---AGtttttttCATTACTATCTTTAACATAAGTATCGATCA 50242
|| || | ||| || || | || ||| ||| || ||| ||| | || || |
Sbjct 19687 AATAGCCTCAAAAAGCATTTGACGTTCTTTTATT----TCAGTAATATATCTGTCAATTA 19742
Query 50243 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA-T 50301
| | ||| |||| |||||| | ||||| ||||| |||||| | || | ||| |
Sbjct 19743 ACAAGGAATATGTTTCATTATGAATTTGCTCAATAGCCATTTGAAATGCATA-ATACATT 19801
Query 50302 CTAGCCTCGGTAATCTGCACTTCT-GTACAAAATCGTTCAGCTAAATTTTCATTCACTAT 50360
|| || || | || || | |||| || |||| | |||| || ||||| | || ||
Sbjct 19802 CTTGCTTCTGGGATATGTATTTCTCTTAGGAAATTG-ACAGCCAAGTTTTCCATAACAAT 19860
Query 50361 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGT 50420
|| ||||| || ||||| || || | || | ||| ||||||||| | || |||| |
Sbjct 19861 ACCATCACTAGCAGCAAAGAAAGCTAGGACGTATTTAATAAAATGTCTCTC--AGGGTCT 19918
Query 50421 T--AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 50478
| || | | |||||| | |||||| | || || | ||||| ||||||
Sbjct 19919 TTAAGACTTTCCCAATCTCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAACCCAAAAC 19978
Query 50479 GATGCCTCTGCCTTTTTATACATATTCCAGATGTC 50513
||||| ||||| |||||||||||| ||| || ||
Sbjct 19979 GATGCTTCTGCTTTTTTATACATAAACCAAATATC 20013
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718266321972640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |