Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq45 197 1e-45 >seq45 Length=29048 Score = 197 bits (218), Expect = 1e-45 Identities = 574/867 (66%), Gaps = 35/867 (4%) Strand=Plus/Plus Query 13582 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13641 |||||||||| | ||||| ||||||||||| || |||||||||| ||||| ||| | Sbjct 19170 TTTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTGGAGTGAAATAAGAT 19229 Query 13642 CCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACA-ACCTAGTTCTAATAGT 13700 |||| |||| || ||||| | |||| | ||| | | | || | || || Sbjct 19230 CCATCCAATCGAAGGGATT-AGAAACATTGTAAATTTTGGGGATATCCAGAGCAAAAAGG 19288 Query 13701 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC-ACAATTCATACCTATTAG 13759 | ||||||||| | ||| ||||||||||||| ||| || || | | ||||| || || || Sbjct 19289 AGTCTATCAGCTACAAATTCAATATATTGAGCCAT-AAGTCTAGAGTTCATTCCAATAAG 19347 Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 | ||||||| | | | ||| | | |||||| | ||||| ||| ||||| Sbjct 19348 ATCAACAGGAAGTGAGTCACAAAGAAAGTTTCTTTCTACATCAACAGCTTCTGAGATAAT 19407 Query 13820 AATTGTAATAATCTCATTAGAAGGAGG------ATATTTTAGATGTTTAAAAATTAAACA 13873 |||| || ||| ||||| || |||||| ||| ||| | ||||| || Sbjct 19408 --TTGTTGTACTCT----AGAAGTTGGTAGTTTATATTTAAGAGCTTTGTATATTAAGCA 19461 Query 13874 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 13933 ||||| ||| ||| | || ||||| | ||||||||||| || || ||||| | ||| Sbjct 19462 AGCAAAGTCAGCATGTAATCCTTCATCACGGCTAATAAGTTCATTAGAGAATGTAAGTCC 19521 Query 13934 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATAT 13993 ||||| | ||| || ||||| | ||||||||| ||| ||| || ||||| | || Sbjct 19522 AGGCATAAGTCCACGCTTTTTAAGCCAAAATATAGCACAAAAGCTACCAGAAAAAAGAAT 19581 Query 13994 TCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATAT 14053 ||| || || ||| || | || | || || |||| ||| || || ||| || Sbjct 19582 TCCTTCTACAGCACAGAATCCAATAATTCTCTCAGCAAAAGATCTTTCATTATTC---AT 19638 Query 14054 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14113 |||||| | |||||||| | ||| ||||||| | || |||||| | ||| Sbjct 19639 CCATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATATGAGAAATAGCCTCAAA 19698 Query 14114 TAAATATT---CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14170 || ||| | |||| |||| | | | ||| ||| | ||||| | ||| ||| | Sbjct 19699 -AAGCATTTGACGTTCT-TTTATTTC-AGTAATATATCTGTCAATTAACAAGGAATATGT 19755 Query 14171 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCA 14230 |||| || || | || ||||| || ||||| ||||| | ||| ||||| | Sbjct 19756 TTCATTATGAATTTGCTCAATAGCCATTTGAAATGCATAATACATTCTTGCTTCTGGGAT 19815 Query 14231 TTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14289 |||| ||| | |||| | | ||||| ||||| |||| |||||||||||||| | Sbjct 19816 ATGTATTTCTCTTAGGAAAT-TGACAGCCAAGTTTTCCATAACAATACCATCACTAGCAG 19874 Query 14290 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT 14349 |||| || || | | || ||||||||| | | ||| | || || ||| ||||| Sbjct 19875 CAAAGAAAGCTAGGACGTATTTAATAAAATGTCTCTCAGGGTCTTTAAGACTTTCCCAAT 19934 Query 14350 C----GGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCT 14405 | | || |||| |||| ||||| ||| |||||| || | ||| Sbjct 19935 CTCTAGTATCTTGACTTAAGTCAATCT-CTTCAGTAAC---CCAAAACGATGCTTCTGCT 19990 Query 14406 TTTTTATACATTACCCATATTTCTTTA 14432 ||||||||||| | ||| || |||||| Sbjct 19991 TTTTTATACATAAACCAAATATCTTTA 20017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479726344938400