Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq45 174 2e-38 >seq45 Length=29048 Score = 174 bits (192), Expect = 2e-38 Identities = 573/869 (66%), Gaps = 39/869 (4%) Strand=Plus/Plus Query 13370 TTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTT 13429 |||||||||| | ||||| |||||||| || || |||||||||| ||||| ||| | Sbjct 19170 TTTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTGGAGTGAAATAAGAT 19229 Query 13430 CCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACA-ACCTAGTTCTAATAAT 13488 |||| ||||||| ||||| | |||| | ||| | | | || | || | Sbjct 19230 CCATCCAATCGAAGGGATTAGAA-ACATTGTAAATTTTGGGGATATCCAGAGCAAAAAGG 19288 Query 13489 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC-ACAATTCATACCTATTAG 13547 | ||||||||| | ||| ||||||||||||| ||| || || | | ||||| || || || Sbjct 19289 AGTCTATCAGCTACAAATTCAATATATTGAGCCAT-AAGTCTAGAGTTCATTCCAATAAG 19347 Query 13548 TTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 13607 | ||||||| | | | | ||| | | |||||| | ||||| || ||||| Sbjct 19348 ATCAACAGGAAGTGAGTCACAAAGAAAGTTTCTTTCTACATCAACAGCTTCTGAGATAAT 19407 Query 13608 AATCTTAATAATGTCATTAGAAGGAGG------ATATTTTAGATGTTTAAAAATTAAACA 13661 | || || | | ||||| || |||||| ||| ||| | ||||| || Sbjct 19408 T-TGTTG-TACTCT----AGAAGTTGGTAGTTTATATTTAAGAGCTTTGTATATTAAGCA 19461 Query 13662 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 13721 ||||| ||| ||| | || ||||| | ||||||||||| || || ||||| | ||| Sbjct 19462 AGCAAAGTCAGCATGTAATCCTTCATCACGGCTAATAAGTTCATTAGAGAATGTAAGTCC 19521 Query 13722 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATA 13780 ||||| | ||| || ||||| | ||||||||| ||| | || | | || ||||| | | Sbjct 19522 AGGCATAAGTCCACGCTTTTTAAGCCAAAATATAGCA-CAAAAGCTACCAGAAAAAAGAA 19580 Query 13781 TTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATA 13840 |||| || || ||| || | || | || || |||| ||| || || || | Sbjct 19581 TTCCTTCTACAGCACAGAATCCAATAATTCTCTCAGCAAAAGATCTTTCATTATT---CA 19637 Query 13841 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGA 13900 ||||||| | |||||||| | ||| ||||||| | || || || | | Sbjct 19638 TCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATATGAGAAATAGCCTCAA 19697 Query 13901 ATA--AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 13958 | | | | | |||| |||| | | | ||| ||| | ||||| | ||| ||| | Sbjct 19698 AAAGCATTTGACGTTCT-TTTATTTC-AGTAATATATCTGTCAATTAACAAGGAATATGT 19755 Query 13959 TTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14018 |||| || || | || ||||| || ||||| ||||| | ||| ||||||| Sbjct 19756 TTCATTATGAATTTGCTCAATAGCCATTTGAAATGCATAATACATTCTTGCTTCTGGGAT 19815 Query 14019 TTGTA--CCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCT 14076 |||| ||| || ||| | | ||||||||||| ||||||||||||||||||| Sbjct 19816 ATGTATTTCTCTTAGGAAA--TTGACAGCCAAGTTTTCCATAACAATACCATCACTAGCA 19873 Query 14077 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAA 14136 ||||| || || | | || ||||||||| | | ||| | || || ||| |||| Sbjct 19874 GCAAAGAAAGCTAGGACGTATTTAATAAAATGTCTCTCAGGGTCTTTAAGACTTTCCCAA 19933 Query 14137 TCGGCTA-AATC----CTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAG 14191 || ||| ||| |||| |||| ||||| ||| |||||| || | | Sbjct 19934 TC-TCTAGTATCTTGACTTAAGTCAATCT-CTTCAGTAAC---CCAAAACGATGCTTCTG 19988 Query 14192 CTTTTTTATACATTACCCATATTTCTTTA 14220 ||||||||||||| | ||| || |||||| Sbjct 19989 CTTTTTTATACATAAACCAAATATCTTTA 20017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478587148868640