Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq69 114 1e-20 seq124 91.5 1e-13 >seq69 Length=29286 Score = 114 bits (126), Expect = 1e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 ||||| || ||||| || | ||| ||||||||| | ||||||||| || | || | Sbjct 9003 AGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGATAGAGTCCTA 9062 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 |||| ||||||||||| || ||||| |||| ||||||||||| | || | ||||||| Sbjct 9063 CCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGGGATACCTTCT 9122 Query 43012 TTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTT 43071 || || ||| |||| || | ||| ||||| || || || || | || Sbjct 9123 TTGTCTTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAACTTCCAATGTG 9182 Query 43072 ATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCT 43114 || || || || |||| |||||| |||||||| ||||| |||| Sbjct 9183 ATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCATCTTCT 9225 >seq124 Length=102498 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/223 (70%), Gaps = 10/223 (4%) Strand=Plus/Minus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 |||||||| || ||||| | |||| ||||||||| | ||||||||| || | || | | Sbjct 26535 AGTCTTAAGACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCAGAGAGAGTTCTT 26476 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 | || || ||||| || || ||||| || || ||||||||||| | || | ||||| Sbjct 26475 CCATCCTCTAATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGTGGAATTCCTTCC 26416 Query 43012 TTTTCGCTGATCAACTCTTTGACTCTGC-----CAACTGTGTCGCCAGCCTCGACGTCTA 43066 || || ||| | |||||| || | | ||| |||||| | || || || | Sbjct 26415 TTATC-CTG----AATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACTTCCA 26361 Query 43067 CCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || || || || || | ||| || |||||||| ||||| Sbjct 26360 AAGTGATTGTCTTCCCTGTCAAAGTCTTAACAAAAATCTGCAT 26318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381368317168008