Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq69 122 6e-23 seq124 104 1e-17 >seq69 Length=29286 Score = 122 bits (134), Expect = 6e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||| ||||||| | ||| ||||| ||||| || ||||| ||||| ||||||||||||| Sbjct 8992 CACCACCTCTTAGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAG 9051 Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 | | | | ||| |||||||| |||||| ||| || | ||| || || || | | Sbjct 9052 ATAGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTG 9111 Query 33261 GTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAA 33320 | || |||||||| || |||| |||||| | | ||| ||||| |||| || Sbjct 9112 GGATACCTTCTTTGTCTTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAA 9171 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 | |||| || || || || || || | ||||||||| ||||| ||||| || Sbjct 9172 CTTCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCATCTT 9223 >seq124 Length=102498 Score = 104 bits (114), Expect = 1e-17 Identities = 166/235 (71%), Gaps = 14/235 (6%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | | || || |||||||| || ||||| ||||| |||||||||||||| Sbjct 26545 ACCACCTCTGAGTCTTAAGACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCAGA 26486 Query 33202 CAAATTGAGTTGGT-CATCC---AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 | ||||| | ||||| |||||||| || ||| |||||||| || || || | Sbjct 26485 GA----GAGTTCTTCCATCCTCTAATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAG 26430 Query 33258 TGGGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGG 33314 || || ||||| || || |||| ||| ||||| ||| ||| ||||| | Sbjct 26429 GTGGAATTCCTTCCTTATCCTGAATCTTTGCC---TTTACATTTTCAATTGTGTCCGATG 26373 Query 33315 GTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| ||| |||| ||| || || || || || | ||| || || ||||| ||||| Sbjct 26372 GTTCAACTTCCAAAGTGATTGTCTTCCCTGTCAAAGTCTTAACAAAAATCTGCAT 26318 Score = 102 bits (112), Expect = 5e-17 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | | || || ||||| || || ||||||||||| |||||||||||||| Sbjct 26773 ACCACCTCTGAGTCTTAAGACTAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGA 26714 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | | || || |||||||| || || ||||||||||| || || | || Sbjct 26713 AAGAGTTCTTCCATCTTCTAATTGCTTCCCCGCGAAGATTAAACGTTGTTGATCAGGTGG 26654 Query 33262 TATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || || || || || |||| ||| ||||| ||| ||| ||||| |||| Sbjct 26653 AATTCCCTCCTTATCTTGAATCTTTGCC---TTTACATTTTCAATTGTGTCCGATGGTTC 26597 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || | ||| || || |||||||| | ||||| || ||||| ||||| Sbjct 26596 AACCTCTAAAGTGATTGTCTTTCCCGTCAATGTTTTGACAAAAATCTGCAT 26546 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | | ||| |||||||| || || ||||||||||| |||||||||||||| Sbjct 27000 CCACCTCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGAA 26941 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | | || || |||||||| || || ||||||||||| || || | || Sbjct 26940 AGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGGA 26881 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTT-TGAATCGTGTCGTTGGGTTGAAC 33321 || || || || || |||| || ||| ||| | ||| ||||| |||| ||| Sbjct 26880 ATTCCCTCCTTATCTTGAATC-TTTGCCTTAACGTTCTCAATTGTGTCCGATGGTTCAAC 26822 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || | ||| || || ||||| || | ||||| || ||||| ||||| Sbjct 26821 TTCTAAAGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCAT 26774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318776527711848