Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq69 210 5e-49 seq124 176 1e-38 seq45 123 6e-23 >seq69 Length=29286 Score = 210 bits (232), Expect = 5e-49 Identities = 188/236 (80%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || |||||||| || | ||| | || || ||||| || || |||||||| || |||||| Sbjct 8994 CCACCTCTTAGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGAT 9053 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 ||||| ||||||||||| | ||||||||||||||| || || | |||||||||||| || Sbjct 9054 AGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGGG 9113 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || |||||||| || |||||||||||||||||||| || | || || |||||| || Sbjct 9114 ATACCTTCTTTGTCTTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAACT 9173 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTAC 104568 || | ||| || ||||| ||||| | ||||||||||| |||||||| || | ||| Sbjct 9174 TCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCATCTTCTCTAC 9229 >seq124 Length=102498 Score = 176 bits (194), Expect = 1e-38 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || || | |||| |||||| || || ||||| || ||||| || ||| Sbjct 26775 ATACCACCTCTGAGTCTTAAGACTAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCA 26716 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || ||||||| ||| || || || || |||| | ||||||||||| Sbjct 26715 GAAAGAGTTCTTCCATCTTCTAATTGCTTCCCCGCGAAGATTAAACGTTGTTGATCAGGT 26656 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| || ||||| ||||||||||| ||||||||||| | || || ||||| Sbjct 26655 GGAATTCCCTCCTTATCTTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCA 26596 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||| || || ||||| || || | |||||| ||||| |||||||| Sbjct 26595 ACCTCTAAAGTGATTGTCTTTCCCGTCAATGTTTTGACAAAAATCTGCAT 26546 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || || | |||| ||| || || || || || |||||||| || ||| Sbjct 26547 ATACCACCTCTGAGTCTTAAGACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCA 26488 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || || |||| ||| || || ||||| |||| | |||||||||||| Sbjct 26487 GAGAGAGTTCTTCCATCCTCTAATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGT 26428 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| ||||||||||||||||| ||||||||||| | || || ||||| Sbjct 26427 GGAATTCCTTCCTTATCCTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCA 26368 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || ||||| || || | || || ||||| |||||||| Sbjct 26367 ACTTCCAAAGTGATTGTCTTCCCTGTCAAAGTCTTAACAAAAATCTGCAT 26318 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || || | ||| | |||||| || || ||||| || ||||| || ||| Sbjct 27003 ATTCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCA 26944 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || ||||||| ||| || || || || |||| | ||||||||||| Sbjct 26943 GAAAGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGT 26884 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| || ||||| ||||||||||| || || || || | || || ||||| Sbjct 26883 GGAATTCCCTCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTGTCCGATGGTTCA 26824 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| || || ||||| || || | |||||| ||||| |||||||| Sbjct 26823 ACTTCTAAAGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCAT 26774 >seq45 Length=29048 Score = 123 bits (136), Expect = 6e-23 Identities = 335/498 (67%), Gaps = 25/498 (5%) Strand=Plus/Minus Query 269150 GCTGTAGAAGGTATATTCTTTTC-GGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAG 269208 ||||||||||| || | ||||| || |||||| ||||| |||||| | || || | Sbjct 19593 GCTGTAGAAGGAATTCTTTTTTCTGGTAGCTTTTG-TGCTATATTTTGGCTTAAAAAGCG 19535 Query 269209 AGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACA 269268 || |||||||| ||| | || |||||||| ||| | || ||| | || ||||| ||||| Sbjct 19534 TGGACTTATGCCTGGACTTACATTCTCTAATGAACTTATTAGCCGTGATGAAGGATTACA 19475 Query 269269 CTGC-GACTTCGCTTGTTTATTATTTACTAATTATCTTTCACACAAACCTTCTCAA--GA 269325 ||| ||||| ||||| ||| || ||| || |||| | | |||| | ||| Sbjct 19474 -TGCTGACTTTGCTTGCTTA--ATATAC-AAAGCTCTTAAATATAAAC--TACCAACTTC 19421 Query 269326 TAGAGTATACGAAATTAT---AGATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGGA 269382 ||||||| | ||||||| ||| ||||||| |||||||| | | ||||| || Sbjct 19420 TAGAGTACAACAAATTATCTCAGA---AGCTGTTGATGTAGAAAGAAACTTTCTTTGTGA 19364 Query 269383 AGCTCTATCTATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAATATATTAAGTT 269442 | || || | |||||||| || ||||| | | ||| |||||||| | || Sbjct 19363 CTCACTTCCTGTTGATCTTATTGGAATGAACTCTAGACTTATGGCTCAATATATTGAATT 19304 Query 269443 CGTATCTGATAGATTGCTGGTGTCTTTAGGGTTTAGTAAAAAATATAACGTTGAAAATCC 269502 ||| |||||||| | || | || | | | |||| || || ||| ||||| Sbjct 19303 TGTAGCTGATAGACTCCTTTTTGCTCTGGATATCCCCAAAATTTACAATGTTTCTAATCC 19244 Query 269503 GTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAGAAGCGGGT 269562 || || ||||| ||| ||| | ||||||| | |||||||| || ||| | || Sbjct 19243 CTTCGATTGGATGGATCTTATTTCACTCCAAGGTAAAACCAATTTCTTTGAAAAGAGAGT 19184 Query 269563 AAGTAACTATCAGAAAATG---GGTGTAATGTCTACTAAAGAAGA-AAATATTTTCACTA 269618 | | |||| ||||| || || ||| || | |||| || || | ||| ||| Sbjct 19183 CGGAGAATATC---AAATGGCTGGAGTTATGGTTAATCAAGATGACCAAAAGTTTGACT- 19128 Query 269619 CAGATGCAGAATTCTAAT 269636 ||||||||||||||||| Sbjct 19127 TAGATGCAGAATTCTAAT 19110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151394328367408