Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq83 118 2e-22 >seq83 Length=111094 Score = 118 bits (130), Expect = 2e-22 Identities = 189/270 (70%), Gaps = 6/270 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | ||| || ||||| |||||||| ||||| || ||||| ||| Sbjct 77313 GCCAAGCGTCATCGTAAGGTTCTCCGTGATAATATCCAAGGTATCACAAAACCAGCCATC 77254 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || || | ||||| || |||||| | || | ||| |||| ||||| | Sbjct 77253 CGTCGTCTTGCACGCAGAGGTGGTGTTAAGCGTATTTCCGCCTTGATCTACGAAGAAGTC 77194 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||| ||||| ||| | | ||||||||| | ||||| | ||| || ||| Sbjct 77193 AGAGGTGTATTGAAAGCATTCTTGGAAACCGTTATCAAGGATGCAGTTACCTACACTGAG 77134 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 | || | ||||||||| || || | |||||| | || |||| | || | |||| Sbjct 77133 TATGCCAGACGTAAGACCGTTACTGCTATGGATGTAGTTCATGCTCTTAAGAGACAAG-- 77076 Query 16673 CGTAAGA---TTTATGGTTTTGGAAGTTAA 16699 | |||| | || |||||||| ||||| Sbjct 77075 -GAAAGACTCTATACGGTTTTGGTGGTTAA 77047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074947651268