Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq97 251 9e-62 seq45 163 4e-35 >seq97 Length=14183 Score = 251 bits (278), Expect = 9e-62 Identities = 1177/1854 (63%), Gaps = 36/1854 (2%) Strand=Plus/Minus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 |||||||| || ||| | |||| || || | |||||| || || || ||||||| Sbjct 9755 GTGAATTGTATTGGACGTGTTGCGCTTTGAGTTCTTAGATAATAAATGCCAGTTTTTAAT 9696 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || |||| || || |||||||| | || || | | | | | || | | ||| Sbjct 9695 CCTTTTTTCCAGCCATAGAAATGCATCGATGATAACTTTGCAAAGTTAGCATTTTCCATA 9636 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 || ||||| | ||| ||| || || | | ||||| ||||||||||| | || Sbjct 9635 TGAATATTTAAAGACTGAGACTGGCAAATATATGGGCCCCTATCTGCAGCCATATCGATT 9576 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACT-CGCTTAATATCTTCTGGAAG 62233 | |||||||| ||| ||||||| |||||||||| | ||| | || | ||| Sbjct 9575 ACTGTCTTTTGCTTAATCTCCCAAACTGTTTTATAAAGTTCGCGGACGTCCTCCGGGATT 9516 Query 62234 GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291 || | |||| ||||| |||| || ||| || || | | || | | |||| | Sbjct 9515 GTAAGAATATTTTGAATACTTCCATTATTTGCAATGATATTTTGTTTAAGCCTGTCATCC 9456 Query 62292 CATAATTTTCTCTCGGTTAA--AACTC--TAAGGAGATGCGGATTAACTACTTGAAATTC 62347 |||| | | | | || || || | || | ||| ||||| ||||| |||||| Sbjct 9455 CATAG----CCCAAGTTCAAGCAAGTCATTGAGTAAATGAGGATTCACTACAAAAAATTC 9400 Query 62348 TCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATT 62407 ||||| | ||| || ||| || ||||| ||| | ||||| | || || || Sbjct 9399 ACCAGAAAGTACCCTACGATGATATATATTTGAAGTAAATGGTTCAAAACTTTCGTTGTT 9340 Query 62408 TCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAG 62467 || || ||||| | || || ||||| ||||| || || | | | ||| | || Sbjct 9339 ACCTAATATTTGCGAGGTAGACGCAGTAGGCATTGGAGCAATTAGAAGTGAATTACGGAG 9280 Query 62468 ACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC---GGTAC 62524 || || | || | ||||| || | ||||| | ||||| | || || Sbjct 9279 CCCATACTTAGAAATCCTTTCTTTAAGTGAATCCCAGTCGCAAAGCCCAGAATCAGGCTT 9220 Query 62525 AACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATC 62584 ||| |||||||||||| ||||| ||| || || ||| || || Sbjct 9219 AACTCCCCACATGTCAAATTGTAGAATACCTTTACTCGCGGGTGACCCAGAATACGTTTC 9160 Query 62585 GTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGT 62644 || || || || || || || || || ||||| ||||| | || | |||||||| Sbjct 9159 ATACGGCCCATCTTTTTCTGCGAGCTCGCAACTAGCCTCGAGCGCCGCATAATAAATAAC 9100 Query 62645 TTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGG-ATAATTTAAG 62702 ||| || |||| |||||||| | | | |||| | | ||| |||| ||| ||| Sbjct 9099 TTCAAAAATCTCCTTATTTAATTTCCTAGCCTTCTCTGAT-TCATATGGCATACG--AAG 9043 Query 62703 -AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62761 | ||||| || || | ||||||||||||||| || | || | |||| | ||| Sbjct 9042 CATCATAAAGCAATCTGCAAGTCCTTGAACACCAATTCCAAGCGGGCGATGTTTTAGATT 8983 Query 62762 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT 62821 ||| ||| | |||||| | || |||||| ||| | |||||| || | ||| || Sbjct 8982 TGAGTTTTTACATTCTGGGAGAGAATAATATCCGTGATCAACAATTTTGTTTAAATTCCT 8923 Query 62822 GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCC---ATCTATTAC 62878 ||| ||| | || ||||| | || ||| || ||| |||| | | Sbjct 8922 CGTAATAACTCTCGTAACTTCCTTTAACTTATCAAAGTCGAATGTTTTGTTATCTTTGTC 8863 Query 62879 AAACATGTTC--AAGGC-AACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 62935 || | ||| ||| | || || ||||| |||||||| || | ||||| || | Sbjct 8862 AACAAACTTCGGAAGACCAATGGACGCCAGGTTACAAACAGCAATTTCATTTGCGCTAGT 8803 Query 62936 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 62995 || | ||| || || ||||| | |||||| | ||||| || ||||||| || || Sbjct 8802 GTACTCTATAATTTCGGTGCATAAATTACTGGAAACAATAGTCCCCAAATTTTTCTGGTT 8743 Query 62996 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63055 |||||| | || || ||||| || ||||| || || || |||||||| |||| Sbjct 8742 ACTCTTACTATTCGCAGCGTCCTTGTAGCAGATGAAAGGCGTTCCTGTTTCAATTTGAGC 8683 Query 63056 TTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCT----CCTT 63110 || || || ||| | | || | ||||| || || ||| || || | Sbjct 8682 TTGTAGGATTAAAAACCAAA-GTTTCTGCGCCTTCAT---AGTTTTTCTTCCGCGGCCCT 8627 Query 63111 TCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCA 63170 || ||||||| | ||| | | | ||||| || |||||||||| | ||| || Sbjct 8626 GCT-TTTCGTACTCTTCATATAGTTTCTTAAACTCATCACCCCAAACATCTTGCAACCCC 8568 Query 63171 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63230 ||||||||||||||||| | | ||| ||| ||| | || || | | |||||| Sbjct 8567 CTGCATTCATCCGGACACATAAGAGTCCAATCTTGGTCTTTCTCAACCCTCTCCATAAAT 8508 Query 63231 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 63290 |||||||||| |||||| || ||| || || | | ||| ||||| ||||| | Sbjct 8507 AGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGGCATCTCATCTCCTCTTTTCCATGA 8448 Query 63291 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63350 |||||| | | || | ||| ||| || ||| ||||||||| ||||| || || || Sbjct 8447 TTCTTTCTTATTTCAATAAACTCCACAACATCTACATGCCACGGCTCCAAATAAATTGCA 8388 Query 63351 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63410 || | || ||||| ||| || || || || |||||||| || | ||||||||| Sbjct 8387 ATCGCACCCTTGCGTTTCCCTCCACCTTGGTCAATATATCTAGCAGTATCATTATAAACG 8328 Query 63411 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTG 63470 | ||||||||||| | || || || | ||||||||||| ||||| || | Sbjct 8327 CGTAACATTGGAATCAGTCCATTAGACCTTCCATTGGTACCCCGAATATACGAGCCCGTT 8268 Query 63471 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63530 | | ||||||||| | || | || | || || || | ||| || ||| ||| Sbjct 8267 CCTCTAATATTACTCACTGCCACTCCAAGACCGCCGGCAGTCTTACTAATATTTGCACAT 8208 Query 63531 CGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAG 63590 | ||| ||||||| | ||||| ||||| ||| || || | |||| |||||| Sbjct 8207 TTTGTTAGCGTGTCAAAAATACCATCTATAGAATCCTCTGGTATTCTGAGTAAAAAACAA 8148 Query 63591 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63650 |||||||| | | ||| || | || || | ||||| | ||| || ||||| Sbjct 8147 GATGACATTTGAGGTCTTGGAGTGCCGGAGTTGAAAAGCGTAGGTGTAGCATGGGTAAAA 8088 Query 63651 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63710 | |||| || | || || || || || | || | || ||||| | ||| || Sbjct 8087 TACTTTTGCGATAATAATTTATATGTTTCGAGTGCAGCCTCGATATCACCGCAATGTATA 8028 Query 63711 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63770 || | || | ||||| | || || ||||| || || |||||||| | ||| | Sbjct 8027 CCACAAGAAACTCTCATTAGAAGATGTTGTGGTCTCTCTACAATCTTGTTATCAATTCTG 7968 Query 63771 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63824 | | ||||| |||| |||||||| || ||||||| | ||| ||| ||| Sbjct 7967 AGAAGATAGGACCTTTCTAAAGTTTTGAATGCAAAATAATCATATTCAAAATCT 7914 >seq45 Length=29048 Score = 163 bits (180), Expect = 4e-35 Identities = 565/863 (65%), Gaps = 34/863 (4%) Strand=Plus/Plus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 ||||||||| |||| ||||| || || | ||||| || ||||| ||||| |||| Sbjct 19156 CATAACTCCAGCCATTTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTG 19215 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 33119 | ||| ||| ||||| |||| || ||||| | |||||| |||||||| | | Sbjct 19216 GAGTGAAATAAGATCCATCCAATCGAAGGGATTAGAAACATTGTAAATTTTGGGGATATC 19275 Query 33120 CAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATT 33179 || || ||| | |||||| || || ||||| |||||| ||| | | | | || Sbjct 19276 CAGAGCAAAAAGGAGTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGTT 19335 Query 33180 CATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGC 33239 |||||| ||||| | ||| ||||| | || |||||| | | ||| | || || Sbjct 19336 CATTCCAATAAGATCAACAGGAAGTGAGTCACAAAGAAAGTTTCTTTCTACATCAACAGC 19395 Query 33240 ATCTGTTATAATAGATCTAACGGTTTCTTCAC-TCGGTGGATGCAATAAATG---TTTAA 33295 |||| ||||| | || ||| | | ||| | | || | | ||| Sbjct 19396 TTCTGAGATAATTTGTTGTAC----TCTAGAAGTTGGTAGTTTATATTTAAGAGCTTTGT 19451 Query 33296 ACATCAAACATGCGAAATC-GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 | || || || || || || ||| || | || || || | ||||| ||||| || || Sbjct 19452 ATATTAAGCAAGCAAAGTCAGCA-TGTAATCCTTCATCACGGCTAATAAGTTCATTAGAG 19510 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CC 33413 || || ||||| ||||| || ||||||||||||||||||||||| | | | || | | || Sbjct 19511 AATGTAAGTCCAGGCATAAGTCCACGCTTTTTAAGCCAAAATATAGCA-CAAAAGCTACC 19569 Query 33414 AGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT 33473 |||||| | ||||||||||| ||| || |||||| |||||| || || | || Sbjct 19570 AGAAAAAAGAATTCCTTCTACAGCACAGAATCCAATAATTCTCTCAGCAAAA---GATCT 19626 Query 33474 GTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33530 || || ||||| || ||||| || || |||||||| || || || Sbjct 19627 TTCATTATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATATGAGA 19686 Query 33531 TATGGCATTAAAGAG-AT---AGtttttttCATTACTATCTTTAACATAAGTATCGATCA 33586 || || | ||| || || | || ||| ||| || ||| ||| | || || | Sbjct 19687 AATAGCCTCAAAAAGCATTTGACGTTCTTTTATT----TCAGTAATATATCTGTCAATTA 19742 Query 33587 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA-T 33645 | | ||| |||| |||||| | ||||| ||||| |||||| | || | ||| | Sbjct 19743 ACAAGGAATATGTTTCATTATGAATTTGCTCAATAGCCATTTGAAATGCATA-ATACATT 19801 Query 33646 CTAGCCTCGGTAATCTGTACTTCT-GTACAAAATCGTTCCGCCAAATTTTCATTCACTAT 33704 || || || | || |||| |||| || |||| | | ||||| ||||| | || || Sbjct 19802 CTTGCTTCTGGGATATGTATTTCTCTTAGGAAATTG-ACAGCCAAGTTTTCCATAACAAT 19860 Query 33705 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGT 33764 || ||||| || ||||| || || | || | ||| ||||||| | | || ||| | Sbjct 19861 ACCATCACTAGCAGCAAAGAAAGCTAGGACGTATTTAATAAAATGTCTCTC--AGGGTCT 19918 Query 33765 T--AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 33822 | || | | |||||| | |||||| | || || | ||||| |||||| Sbjct 19919 TTAAGACTTTCCCAATCTCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAACCCAAAAC 19978 Query 33823 GATGCCTCTGCCTTTTTATACAT 33845 ||||| ||||| ||||||||||| Sbjct 19979 GATGCTTCTGCTTTTTTATACAT 20001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622945050832160