Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq45 201 3e-46 seq97 178 3e-39 >seq45 Length=29048 Score = 201 bits (222), Expect = 3e-46 Identities = 401/581 (69%), Gaps = 20/581 (3%) Strand=Plus/Minus Query 22430 CAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGG 22489 || |||| || || ||||| ||||| ||||||||||| |||||| | || || || | Sbjct 19673 CAGTTAAAAAGAAAGCAGAATGGGCAACTAAATGGATGAATAATGAAAGATCTTTTGCTG 19614 Query 22490 AACGTCTTATTGCATTTGCTGTG--GTTGAAGGCATTTTCTTTTCTGG-AGCATTTTGTG 22546 | | |||||| ||| ||||| || ||||| ||| | |||||||| ||| ||||||| Sbjct 19613 AGAGAATTATTGGATT--CTGTGCTGTAGAAGGAATTCTTTTTTCTGGTAGC-TTTTGTG 19557 Query 22547 CAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAA 22606 | || |||||||| ||||| |||| | ||||||| || || || || || ||||| | | Sbjct 19556 CTATATTTTGGCTTAAAAAGCGTGGACTTATGCCTGGACTTACATTCTCTAATGAACTTA 19497 Query 22607 TTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCA 22666 ||||||| ||||| || | ||| | || ||||| || | |||| || | | | Sbjct 19496 TTAGCCGTGATGAAGGATTACATGCTGACTTTGCTTGCTTAATATA---CAAAGCTCTTA 19440 Query 22667 TTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAAC 22726 ||||||| ||| | | |||| | ||||| || | || ||||| | ||| Sbjct 19439 AATATAAACTACCAACTTCTAGAGTACAACAAATTATCTCAGAAGCTGTTGATGTAGAAA 19380 Query 22727 GTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGA 22786 | ||| |||| || | | || || ||| ||||| || || | | ||| Sbjct 19379 GAAACTTTCTTTGTGACTCACTTCCTGTTGATCTTATTGGAATGAACTCTAGACTTATGG 19320 Query 22787 GTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTAT-GCAAAGCAT 22845 | ||||||| ||||||| || ||| | || | || | || || ||| | || | Sbjct 19319 CTCAATATATTGAATTTGTAGCTGATAGACTCCTTTTTGCTCT-GGATATCCCCAAAATT 19261 Query 22846 TATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAAT 22905 || || || |||||| || || |||||||| ||||||||||| |||| || |||||| Sbjct 19260 TACAATGTTTCTAATCCCTTCGATTGGATGGATCTTATTTCACTCCAAGGTAAAACCAAT 19201 Query 22906 TTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGGATGCATTGAATGAT 22965 ||||| ||||| ||||| || ||||| |||| || || ||||||| | | | || ||| Sbjct 19200 TTCTTTGAAAAGAGAGTCGGAGAATATCAAATGGCTGGAGTTATGGTT--AATCAA-GAT 19144 Query 22966 AGTTCAAAACACGGATTTACATTAGATGAAGAATTTTAATT 23006 | ||||| | || || ||||||| |||||| ||||| Sbjct 19143 -GACCAAAA----GTTTGAC-TTAGATGCAGAATTCTAATT 19109 >seq97 Length=14183 Score = 178 bits (196), Expect = 3e-39 Identities = 575/883 (65%), Gaps = 10/883 (1%) Strand=Plus/Plus Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 ||||| || | || || ||| | ||||| | ||| || |||||| |||||| ||| Sbjct 7984 ATTGTAGAGAGACCACAACATCTTCTAATGAGAGTTTCTTGTGGTATACATTGCGGTGAT 8043 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTC-ACGCACGCCAC 363560 | || || || | ||||||||||| || | | || ||||| || || || || Sbjct 8044 ATCGAGGCTGCACTCGAAACATATAAA-TTATTATCGCAAAAGTATTTTACCCATGCTAC 8102 Query 363561 GCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAA 363620 || || | | ||| | || |||| | || || ||||| ||||| ||| | || | Sbjct 8103 ACCTACGCTTTTCAACTCCGGCACTCCAAGACCTCAAATGTCATCTTGTTTTTTACTCAG 8162 Query 363621 AATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTC 363680 ||| || ||||| || || ||||| |||||||| || | || ||||| |||| Sbjct 8163 AATACCAGAGGATTCTATAGATGGTATTTTTGACACGCTAACAAAATGTGCAAATATTAG 8222 Query 363681 CAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACAT 363740 |||| ||| ||||| |||| || | | ||| || | | | | | || || Sbjct 8223 TAAGACTGCCGGCGGTCTTGGAGTGGCAGTGAGTAATATTAGAGGAACGGGCTCGTATAT 8282 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| || || ||| || ||||| ||| |||| ||| | || || | | | |||| Sbjct 8283 TCGGGGTACCAATGGAAGGTCTAATGGACTGATTCCAATGTTACGCGTTTATAATGATAC 8342 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGA 363860 ||| || || | ||||| |||||||| || ||||| || ||| |||| || ||| | || Sbjct 8343 TGCTAGATATATTGACCAAGGTGGAGGGAAACGCAAGGGTGCGATTGCAATTTATTTGGA 8402 Query 363861 GCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGA 363920 ||| |||| ||| || | |||||| |||| | | || || ||||||||||| Sbjct 8403 GCCGTGGCATGTAGATGTTGTGGAGTTTATTGAAATAAGAAAGAATCATGGAAAAGAGGA 8462 Query 363921 ATTGCG-TGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCG 363979 || | ||| ||||| || || ||| ||||||||| |||| | |||||| || | | Sbjct 8463 GATGAGATGC-CGTGACCTCTTTCCTGCCCTTTGGGTTCCTGATCTATTTATGGAGAGGG 8521 Query 363980 TGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCC--GA 364037 | ||| || | ||||| | || | || || | ||||| |||| || | || Sbjct 8522 TTGAGAAAGACCAAGATTGGACTCTTATGTGTCCGGATGAATG--CAGGGGGTTGCAAGA 8579 Query 364038 TGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCG 364097 ||| |||||||| || | | ||||| ||| |||| ||| | |||| | | Sbjct 8580 TGTTTGGGGTGATGAGTTTAAGAAACTATATGAAGAGTACGAAAAGCAGGGCCGCGGAAG 8639 Query 364098 TAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGG 364157 || || || || ||||| || |||||| ||| | | | || ||||| ||||| Sbjct 8640 AAAAACTATGAAGGCGCAGAAACTTTGGTTTTTAATCCTACAAGCTCAAATTGAAACAGG 8699 Query 364158 AACACCCTATATGTTGTACAAAGATTCGTGC-AACCGCAAGTCCAACCAGCAGCACCTTG 364216 ||| || | || | ||||| || | ||| || | ||| |||||| | | | | Sbjct 8700 AACGCCTTTCATCTGCTACAAGGACGC-TGCGAATAGTAAGAGTAACCAGAAAAATTTGG 8758 Query 364217 GTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGA 364276 | || ||| || || |||| ||||| ||||| || ||||| | | || | Sbjct 8759 GGACTATTGTTTCCAGTAATTTATGCACCGAAATTATAGAGTACACTAGCGCAAATGAAA 8818 Query 364277 CTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT 364319 ||| || |||||||| ||||| || | |||||| |||||| Sbjct 8819 TTGCTGTTTGTAACCTGGCGTCCATTGGTCTTCCGAAGTTTGT 8861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303348991015832