Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq97 246 4e-60 seq45 206 3e-48 >seq97 Length=14183 Score = 246 bits (272), Expect = 4e-60 Identities = 1179/1856 (64%), Gaps = 40/1856 (2%) Strand=Plus/Minus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 |||||||| || ||| | |||| || || | |||||| || || || ||||||| Sbjct 9755 GTGAATTGTATTGGACGTGTTGCGCTTTGAGTTCTTAGATAATAAATGCCAGTTTTTAAT 9696 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || |||| || || |||||||| | || || | | | | | || | | ||| Sbjct 9695 CCTTTTTTCCAGCCATAGAAATGCATCGATGATAACTTTGCAAAGTTAGCATTTTCCATA 9636 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 || ||||| | ||| ||| || || | | ||||| ||||||||||| | || Sbjct 9635 TGAATATTTAAAGACTGAGACTGGCAAATATATGGGCCCCTATCTGCAGCCATATCGATT 9576 Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACT-CGCTTAATATCTTCTGGAAG 62088 | |||||||| ||| ||||||| |||||||||| | ||| | || | ||| Sbjct 9575 ACTGTCTTTTGCTTAATCTCCCAAACTGTTTTATAAAGTTCGCGGACGTCCTCCGGGATT 9516 Query 62089 GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62146 || | |||| ||||| |||| || ||| || || | | || | | |||| | Sbjct 9515 GTAAGAATATTTTGAATACTTCCATTATTTGCAATGATATTTTGTTTAAGCCTGTCATCC 9456 Query 62147 CATAATTTTCTCTCGGTTAA--AACTC--TAAGGAGATGCGGATTAACTACTTGAAATTC 62202 |||| | | | | || || || | || | ||| ||||| ||||| |||||| Sbjct 9455 CATAG----CCCAAGTTCAAGCAAGTCATTGAGTAAATGAGGATTCACTACAAAAAATTC 9400 Query 62203 TCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATT 62262 ||||| | ||| || ||| || ||||| ||| | ||||| | | || || || Sbjct 9399 ACCAGAAAGTACCCTACGATGATATATATTTGAAGTAAATGGTTCAAAACTTTCGTTGTT 9340 Query 62263 TCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAG 62322 || || ||||| | || || ||||| ||||| || || | | | ||| | || Sbjct 9339 ACCTAATATTTGCGAGGTAGACGCAGTAGGCATTGGAGCAATTAGAAGTGAATTACGGAG 9280 Query 62323 ACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC---GGTAC 62379 || || | || | ||||| || | ||||| | ||||| | || || Sbjct 9279 CCCATACTTAGAAATCCTTTCTTTAAGTGAATCCCAGTCGCAAAGCCCAGAATCAGGCTT 9220 Query 62380 AACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATC 62439 ||| |||||||||||| ||||| ||| || || ||| || || Sbjct 9219 AACTCCCCACATGTCAAATTGTAGAATACCTTTACTCGCGGGTGACCCAGAATACGTTTC 9160 Query 62440 GTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGT 62499 || || || || || || || || || ||||| ||||| | || | |||||||| Sbjct 9159 ATACGGCCCATCTTTTTCTGCGAGCTCGCAACTAGCCTCGAGCGCCGCATAATAAATAAC 9100 Query 62500 TTCGAAGATCTTCTTATTTAGAT--CTTGCGCTTCCAGGCTATCAAATGG-ATAATTTAA 62556 ||| || |||| |||||||| | || || |||| | | ||| |||| ||| || Sbjct 9099 TTCAAAAATCTCCTTATTTAATTTCCTAGC-CTTCTCTGAT-TCATATGGCATACG--AA 9044 Query 62557 G-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 62615 | | ||||| ||||| | ||||||||||||||| || | || | |||| | || Sbjct 9043 GCATCATAAAGCAATCTGCAAGTCCTTGAACACCAATTCCAAGCGGGCGATGTTTTAGAT 8984 Query 62616 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 62675 | ||| ||| | |||||| | || |||||| ||| | |||||| || | ||| | Sbjct 8983 TTGAGTTTTTACATTCTGGGAGAGAATAATATCCGTGATCAACAATTTTGTTTAAATTCC 8924 Query 62676 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCC---ATCTATTA 62732 | ||| ||| | || ||||| | || ||| || ||| |||| | Sbjct 8923 TCGTAATAACTCTCGTAACTTCCTTTAACTTATCAAAGTCGAATGTTTTGTTATCTTTGT 8864 Query 62733 CAAACATGTTCA-ATG--CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 62789 ||| | ||| | | ||| || ||||| |||||||| || | ||||| || | Sbjct 8863 CAACAAACTTCGGAAGACCAATGGACGCCAGGTTACAAACAGCAATTTCATTTGCGCTAG 8804 Query 62790 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 62849 || | ||| || || ||||| | |||||| | || || || ||||||| || | Sbjct 8803 TGTACTCTATAATTTCGGTGCATAAATTACTGGAAACAATAGTCCCCAAATTTTTCTGGT 8744 Query 62850 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 62909 ||||||| | || || ||||| || ||||| || || || |||||||| |||| Sbjct 8743 TACTCTTACTATTCGCAGCGTCCTTGTAGCAGATGAAAGGCGTTCCTGTTTCAATTTGAG 8684 Query 62910 ATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCT----CTT 62964 || || || ||| | | || | ||||| || || ||| || | Sbjct 8683 CTTGTAGGATTAAAAACCAAA-GTTTCTGCGCCTTCAT---AGTTTTTCTTCCGCGGCCC 8628 Query 62965 TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCC 63024 | || ||||||| | ||| | | | ||||| || |||||||||| | || || Sbjct 8627 TGCT-TTTCGTACTCTTCATATAGTTTCTTAAACTCATCACCCCAAACATCTTGCAACCC 8569 Query 63025 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63084 ||||||||||||||||| | | ||| ||| ||| | || || | | |||||| Sbjct 8568 CCTGCATTCATCCGGACACATAAGAGTCCAATCTTGGTCTTTCTCAACCCTCTCCATAAA 8509 Query 63085 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63144 |||||||||| |||||| || ||| || || | | ||| ||||| ||||| Sbjct 8508 TAGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGGCATCTCATCTCCTCTTTTCCATG 8449 Query 63145 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63204 ||||||| | | || | ||| ||| || ||| ||||||||| ||||| || || || Sbjct 8448 ATTCTTTCTTATTTCAATAAACTCCACAACATCTACATGCCACGGCTCCAAATAAATTGC 8389 Query 63205 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63264 || | || ||||| ||| || || || || |||||||| || | ||||||||| Sbjct 8388 AATCGCACCCTTGCGTTTCCCTCCACCTTGGTCAATATATCTAGCAGTATCATTATAAAC 8329 Query 63265 TCTCAACATTGGAATAATACCATTGGATGTACCATTGGT-CCCTGAGATATAGCTTCCAC 63323 | ||||||||||| | ||||| || | |||||||| ||| || ||||| || Sbjct 8328 GCGTAACATTGGAATCAGTCCATTAGACCTTCCATTGGTACCCCGA-ATATACGAGCCCG 8270 Query 63324 TGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63383 | | | ||||||||| | || | || | || || || | ||| || ||| | Sbjct 8269 TTCCTCTAATATTACTCACTGCCACTCCAAGACCGCCGGCAGTCTTACTAATATTTGCAC 8210 Query 63384 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 63443 || | ||| ||| ||| | || || |||||| ||| || || | |||| ||||| Sbjct 8209 ATTTTGTTAGCGTGTCAAAAATACCATCTATAGAATCCTCTGGTATTCTGAGTAAAAAAC 8150 Query 63444 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAA 63503 | |||||||| | | ||| || | || || | ||||| | ||| || |||| Sbjct 8149 AAGATGACATTTGAGGTCTTGGAGTGCCGGAGTTGAAAAGCGTAGGTGTAGCATGGGTAA 8090 Query 63504 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAA 63563 | | |||| || | || || || || || | || | || ||||| | ||| | Sbjct 8089 AATACTTTTGCGATAATAATTTATATGTTTCGAGTGCAGCCTCGATATCACCGCAATGTA 8030 Query 63564 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 63623 | || | || | ||||| | || || ||||| || || |||||||| | ||| Sbjct 8029 TACCACAAGAAACTCTCATTAGAAGATGTTGTGGTCTCTCTACAATCTTGTTATCAATTC 7970 Query 63624 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63679 | | | ||||| |||| |||||||| || ||||||| | ||| ||| ||| Sbjct 7969 TGAGAAGATAGGACCTTTCTAAAGTTTTGAATGCAAAATAATCATATTCAAAATCT 7914 >seq45 Length=29048 Score = 206 bits (228), Expect = 3e-48 Identities = 581/875 (66%), Gaps = 34/875 (4%) Strand=Plus/Plus Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416 ||||||||| |||| ||||| || || | ||||| || ||||| |||||||||| Sbjct 19156 CATAACTCCAGCCATTTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTG 19215 Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCC 32476 | ||| ||| ||||| ||||||| ||||| | |||||| |||||||| | | Sbjct 19216 GAGTGAAATAAGATCCATCCAATCGAAGGGATTAGAAACATTGTAAATTTTGGGGATATC 19275 Query 32477 CAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 32536 || || ||| | |||||| || |||||||| |||||| ||| | | | | || Sbjct 19276 CAGAGCAAAAAGGAGTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGTT 19335 Query 32537 CATTCCTATAAGTTTAACTGGAAG--AGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 32594 |||||| ||||| | ||| ||||| || |||| |||||| | | ||| | | || Sbjct 19336 CATTCCAATAAGATCAACAGGAAGTGAGTCACA--AAGAAAGTTTCTTTCTACATCAACA 19393 Query 32595 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATG---TTTA 32651 || |||| ||||| | |||| | | | ||| | | || | | ||| Sbjct 19394 GCTTCTGAGATAATTTGTTGTACTCTAGA---AGTTGGTAGTTTATATTTAAGAGCTTTG 19450 Query 32652 AACATCAAACATGCGAAATC-GCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 32710 | || || || || || || ||| |||| || || || | ||||| | ||| || || Sbjct 19451 TATATTAAGCAAGCAAAGTCAGCA-TGTAATCCTTCATCACGGCTAATAAGTTCATTAGA 19509 Query 32711 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-C 32769 || || ||||| ||||| || ||||||||||||||||||||||| | | |||| | | | Sbjct 19510 GAATGTAAGTCCAGGCATAAGTCCACGCTTTTTAAGCCAAAATATAG-CACAAAAGCTAC 19568 Query 32770 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC 32829 ||||||| | |||||||||||| || || |||||| |||||| || || | | Sbjct 19569 CAGAAAAAAGAATTCCTTCTACAGCACAGAATCCAATAATTCTCTCAGCAAAA---GATC 19625 Query 32830 TGTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 32886 | || || ||||| || ||||| || || |||||||| || || || Sbjct 19626 TTTCATTATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATATGAG 19685 Query 32887 CTATAGCATTAAAGAG-AT---AGtttttttCATTACTATCTTTAACATATGTATCAATC 32942 ||||| | ||| || || | || ||| ||| || ||| |||| | ||||| Sbjct 19686 AAATAGCCTCAAAAAGCATTTGACGTTCTTTTATT----TCAGTAATATATCTGTCAATT 19741 Query 32943 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCAT 33002 || | ||| |||| |||||| | ||||| |||||||||||| | || | | Sbjct 19742 AACAAGGAATATGTTTCATTATGAATTTGCTCAATAGCCATTTGAAATGCATAATACATT 19801 Query 33003 CTAGCCTCGGTAATCTGTACTTCT-GTACAAAATCGTTCTGCTAAATTTTCATTCACTAT 33061 || || || | || |||| |||| || |||| | | || || ||||| | || || Sbjct 19802 CTTGCTTCTGGGATATGTATTTCTCTTAGGAAATTG-ACAGCCAAGTTTTCCATAACAAT 19860 Query 33062 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGT 33121 || ||||| || ||||| || || | || | ||| ||||||| | | || ||| | Sbjct 19861 ACCATCACTAGCAGCAAAGAAAGCTAGGACGTATTTAATAAAATGTCTCTC--AGGGTCT 19918 Query 33122 T--AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 33179 | || | | |||||| | |||||| | || || | ||||| |||||| Sbjct 19919 TTAAGACTTTCCCAATCTCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAACCCAAAAC 19978 Query 33180 GATGCCTCTGCCTTTTTATACATATTCCAGATGTC 33214 ||||| ||||| |||||||||||| ||| || || Sbjct 19979 GATGCTTCTGCTTTTTTATACATAAACCAAATATC 20013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633629813969600