Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq45 206 3e-48 >seq45 Length=29048 Score = 206 bits (228), Expect = 3e-48 Identities = 631/941 (67%), Gaps = 47/941 (5%) Strand=Plus/Plus Query 92741 ATTAGAAATCTGCATCTAGTGTAAATACATT--GTCAAGTGGATTCTTATTCATAACACC 92798 ||||||| |||||||||| || || || || |||| | |||| | |||||| || Sbjct 19110 ATTAGAATTCTGCATCTAA-GTCAA-ACTTTTGGTCATCTTGATT---AACCATAACTCC 19164 Query 92799 ACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATAT 92858 | |||| ||||| || ||| | |||||||||||||| || || |||| | || || Sbjct 19165 AGCCATTTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTGGAGTGAAAT 19224 Query 92859 CGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTA 92916 || || | | || ||||| | || ||| ||| ||| | | | Sbjct 19225 AAGATCCATCCAATCGAAGGGATTAGAAACATTGTAAA---TTTTGGGGAT-ATCCAGAG 19280 Query 92917 CAATAA----TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATC-ACAATTCATT 92971 ||| || |||||||||||||||||| || || |||| ||| || || | | |||||| Sbjct 19281 CAAAAAGGAGTCTATCAGCTACAAATTCAATATATTGAGCCAT-AAGTCTAGAGTTCATT 19339 Query 92972 CCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAA---TCTTTCTCGATTACAACGGCT 93028 || | |||| ||||| || | ||| |||||| ||||||| || |||| ||| Sbjct 19340 CCAATAAGATCAACAGGAAGTGAGTCACA-AAGAAAGTTTCTTTCTACAT--CAACAGCT 19396 Query 93029 TCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATT 93088 ||| | |||| | ||||||| | ||||| |||| | | | | ||||| ||| Sbjct 19397 TCTGAGATAATTTGTTGTACTCTAGAAGTTGGTAGTTTATATTTAAGAGCTTTGTATATT 19456 Query 93089 AAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTT 93148 ||||| |||||||| | |||||| ||||| || || || | ||||| |||||| Sbjct 19457 AAGCAAGCAAAGTCAGCATGTAATCCTTCATCACGGCTAATAAGTTCATTAGAGAATGTA 19516 Query 93149 AAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaa 93208 | || || | ||||| || || || ||||||||||| | | ||| |||||||||||| Sbjct 19517 AGTCCAGGCATAAGTCCACGCTTTTTAAGCCAAAATATAGCACAAAAGCTACCAGAAAAA 19576 Query 93209 aaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG 93268 | || ||||| || || ||| | | ||| | || |||||| | |||| Sbjct 19577 AGAATTCCTTCTACAGCACAGAATCCAATAATTCTCTCAGCAAAAGATCTTTCATTA--- 19633 Query 93269 CTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAA-TACA-AGGTAGTGTTTCGATAG 93326 | |||||||| ||||| || ||||| || |||| | || | || || |||| Sbjct 19634 TTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATA-TG-AGAAATAG 19691 Query 93327 CGTTAAATAGGTAATCTCGCTCGTCCGAATCTC-GT-ATGTATGTATCGATTAACAGAGA 93384 | | ||| || | || || | || || || || ||| | || ||||||| || Sbjct 19692 CCTCAAAAAGCATTTGACGTTCTT--TTATTTCAGTAATATATCTGTCAATTAACAAGGA 19749 Query 93385 ATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACA-TCTAGCTT 93443 ||| ||||| ||| | | ||| || || ||||| ||| | || | ||| ||| |||| Sbjct 19750 ATATGTTTCATTATGAATTTGCTCAATAGCCATTTGAAATGCATA-ATACATTCTTGCTT 19808 Query 93444 CCGTGATCTGCACTTCT-TGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCG 93502 | | ||| || | |||| | || |||| | | | | ||||| | || |||||||| Sbjct 19809 CTGGGATATGTATTTCTCTTAGGAAAT-TGACAGCCAAGTTTTCCATAACAATACCATCA 19867 Query 93503 GATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTA 93562 || ||||| ||||| | | | || ||||||||| ||||| |||||||| | Sbjct 19868 CTAGCAGCAAAGAAAGCTAGGACGTATTTAATAAAATGTCTCTCAGGGTCTTTAAGACTT 19927 Query 93563 TCCCAATCGGATAGATCTTTTGA---AAGATCGACTTCTTCGACAGTCCAAAACGATGCT 93619 |||||||| ||| | | |||| ||| || | ||||| | ||||||||||||| Sbjct 19928 TCCCAATC-TCTAG-TATCTTGACTTAAG-TCAATCTCTTCAGTAACCCAAAACGATGCT 19984 Query 93620 TCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAAT 93660 ||||||||||| |||||| ||| || |||| | ||| ||| Sbjct 19985 TCTGCTTTTTTATACATAAACCAAATATCTTTA-ATTAAAT 20024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556858878830240