Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq124 134 1e-26 seq69 129 5e-25 >seq124 Length=102498 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||||||||| ||||| || || || || ||||| | ||||| ||| | | Sbjct 26318 ATGCAGATTTTTGTTAAGACTTTGACAGGGAAGACAATCACTTTGGAAGTTGAACCATCG 26377 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || ||| ||||| || ||||| || |||||||| |||||| Sbjct 26378 GACACAATTGAAAATGTAAAGGCAAAGATTCAGGATAAGGAAGGAATTCCACCTGATCAA 26437 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| || || || ||||||||| | || |||| |||||||| Sbjct 26438 CAGCGTTTAATCTTTGCAGGGAAGCAATTAGAGGATGGAAGAACTCTCTCTGATTACAAT 26497 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTT 22430 |||||||| || ||||| | |||||||| || Sbjct 26498 ATTCAAAAGGAGTCCACTTTGCATTTAGTCTT 26529 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| ||||| || || || || || ||||| | || || ||| | | Sbjct 26546 ATGCAGATTTTTGTCAAAACATTGACGGGAAAGACAATCACTTTAGAGGTTGAACCATCG 26605 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || ||| |||||||| |||||||| |||||||| |||||| Sbjct 26606 GACACAATTGAAAATGTAAAGGCAAAGATTCAAGATAAGGAGGGAATTCCACCTGATCAA 26665 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || || || || || ||||| ||| | || | || |||||||| Sbjct 26666 CAACGTTTAATCTTCGCGGGGAAGCAATTAGAAGATGGAAGAACTCTTTCTGATTACAAT 26725 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTT 22430 || |||||||| ||||| |||||||||| || Sbjct 26726 ATCCAAAAAGAGTCCACTTTACATTTAGTCTT 26757 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| ||||| || || || || || ||||| | ||||| ||| | | Sbjct 26774 ATGCAGATTTTTGTCAAAACATTGACAGGAAAGACAATCACTTTAGAAGTTGAACCATCG 26833 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || ||| |||||||| |||||||| |||||||| |||||| Sbjct 26834 GACACAATTGAGAACGTTAAGGCAAAGATTCAAGATAAGGAGGGAATTCCACCTGATCAA 26893 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || || || || || ||||| ||| | || | || |||||||| Sbjct 26894 CAACGTTTAATCTTCGCAGGGAAGCAATTAGAAGATGGAAGAACTCTTTCTGATTACAAT 26953 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 || |||||||| ||||| ||||||| || ||| || Sbjct 26954 ATCCAAAAAGAGTCCACTTTACATTTGGTATTGAGA 26989 >seq69 Length=29286 Score = 129 bits (142), Expect = 5e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| |||||||| ||||||||||| || || || |||| | ||||| ||| | Sbjct 9223 AAGATGCAGATTTTTGTAAAAACTTTAACTGGGAAGACCATCACATTGGAAGTTGAACCT 9164 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || | ||| ||| ||||||||||| || ||||| ||||| ||| Sbjct 9163 TCAGACACTATTGAGAATGTAAAAGCAAAGATTCAAGACAAAGAAGGTATCCCACCTGAT 9104 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| ||||| || ||||| || ||||| || || || | || | || |||||| Sbjct 9103 CAACAGCGTCTGATCTTTGCTGGAAAACAATTGGAAGACGGTAGGACTCTATCTGATTAC 9044 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 || |||||||| || || || | || || || ||| || Sbjct 9043 AATATTCAAAAGGAGTCTACTTTGCACTTGGTATTGAGA 9005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726588139940