Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq124 203 6e-47 seq69 154 3e-32 >seq124 Length=102498 Score = 203 bits (224), Expect = 6e-47 Identities = 186/235 (79%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| |||| || | ||| | ||||||||| |||| ||||||||||||||||| || | Sbjct 27008 TTTACATTCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGT 26949 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 |||| || || || || ||||||||||| |||||||| ||||| || | | |||||| | Sbjct 26948 AATCAGAAAGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGAT 26889 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | |||||||| || ||||| ||||||||||||||||| ||| ||| || ||||| | || Sbjct 26888 CAGGTGGAATTCCCTCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTGTCCGATG 26829 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| ||||| || ||||| || ||||| || | || ||||| || |||||||| Sbjct 26828 GTTCAACTTCTAAAGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCAT 26774 Score = 176 bits (194), Expect = 8e-39 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || || || |||| ||||||||||||||||| || ||||| || || || || |||||| Sbjct 26757 AAGACTAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTTCTTCCATCT 26698 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 ||||| |||||||| ||||| || | | |||||| || |||||||| || ||||| ||| Sbjct 26697 TCTAATTGCTTCCCCGCGAAGATTAAACGTTGTTGATCAGGTGGAATTCCCTCCTTATCT 26638 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 |||||||||||||| || || || ||||| | || ||| || || || ||||| || Sbjct 26637 TGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACCTCTAAAGTGATTGTC 26578 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| | || ||||| || |||||||| Sbjct 26577 TTTCCCGTCAATGTTTTGACAAAAATCTGCAT 26546 Score = 156 bits (172), Expect = 8e-33 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 |||||||| ||||| || || ||||| ||||| || || ||||| ||||| |||||||| Sbjct 26514 GTGGACTCCTTTTGAATATTGTAATCAGAGAGAGTTCTTCCATCCTCTAATTGCTTCCCT 26455 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 || || || | | ||||| || |||||||| |||||||| || |||||||||||||| Sbjct 26454 GCAAAGATTAAACGCTGTTGATCAGGTGGAATTCCTTCCTTATCCTGAATCTTTGCCTTT 26395 Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444 || || || ||||| | || ||| |||||||| ||||| || || || || | ||| Sbjct 26394 ACATTTTCAATTGTGTCCGATGGTTCAACTTCCAAAGTGATTGTCTTCCCTGTCAAAGTC 26335 Query 68445 TTGACGAATATCTGCATTATGCTATT 68470 || || || |||||||| || |||| Sbjct 26334 TTAACAAAAATCTGCATAATTGTATT 26309 >seq69 Length=29286 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 |||||||||||| | || ||||| ||||| || || ||||| || || ||||| || || Sbjct 9008 CAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGATAGAGTCCTACCGTC 9067 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||| || || || || || || || || | ||||| || ||||| || ||||| ||||| Sbjct 9068 TTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGGGATACCTTCTTTGTC 9127 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 |||||||||||| || || ||| || ||||||| | ||| |||||||| |||||||| Sbjct 9128 TTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAACTTCCAATGTGATGGT 9187 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | || || || || |||||||| Sbjct 9188 CTTCCCAGTTAAAGTTTTTACAAAAATCTGCAT 9220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921619220402720