Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq69 105 7e-18 seq124 84.2 2e-11 >seq69 Length=29286 Score = 105 bits (116), Expect = 7e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||| ||||| || | ||| | ||| || | |||||| || | | Sbjct 9027 GACTCCTTTTGAATATTGTAATCAGATAGAGTCCTACCGTCTTCCAATTGTTTTCCAGCA 9086 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| ||||||||||| || || || |||||||||||||| ||| | |||| ||||| Sbjct 9087 AAGATCAGACGCTGTTGATCAGGTGGGATACCTTCTTTGTC-TTGAATCTTTGCTTTTAC 9145 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||||| | | || || || | || | || || ||||| | |||||| Sbjct 9146 ATTCTCAATAGTGTCTGAAGGTTCAACTTCCAATGTGATGGTCTTCCCAGTTAAAGTTTT 9205 Query 138600 TACAAAAATCTGCAT 138614 ||||||||||||||| Sbjct 9206 TACAAAAATCTGCAT 9220 >seq124 Length=102498 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 138403 AAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCC 138462 || |||||||| | | |||||||||||||| ||||| || | ||| | ||| Sbjct 26529 AAGACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCAGAGAGAGTTCTTCCATCC 26470 Query 138463 TCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCG 138522 || | ||| || || | | |||||| ||||||||| || || || || ||||| || || Sbjct 26469 TCTAATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGTGGAATTCCTTCCTTATCC 26410 Query 138523 GTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| | |||| |||| | ||| | ||||| | | || || || | || | || Sbjct 26409 -TGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACTTCCAAAGTGATTGT 26351 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || |||| ||| || |||||||||||||| Sbjct 26350 CTTCCCTGTCAAAGTCTTAACAAAAATCTGCAT 26318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260687894720