Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq124 141 7e-29 seq69 134 1e-26 >seq124 Length=102498 Score = 141 bits (156), Expect = 7e-29 Identities = 175/234 (75%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | |||||| |||||||| | || || || ||||| || |||||||| | Sbjct 26544 CCACCTCTGAGTCTTAAGACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCAGAG 26485 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | || |||||||| || || || | || ||||||||||| || |||| Sbjct 26484 AGAGTTCTTCCATCCTCTAATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGTGGA 26425 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTA 15127 ||||||||||| || ||| ||||| |||||| |||| || || || | || ||| | Sbjct 26424 ATTCCTTCCTTATCCTGAATCTTTGC-CTTTACATTTTCAATTGTGTC-CGATGGTTCAA 26367 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15181 | || || || || || || ||||||| ||| || |||||||| |||||| ||| Sbjct 26366 CTTCCAAAGTGATTGTCTTCCCTGTCAAAGTCTTAACAAAAATCTGCATAATTG 26313 Score = 140 bits (154), Expect = 2e-28 Identities = 172/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | |||||| |||||||| | || || |||||||| || |||||||| Sbjct 26772 CCACCTCTGAGTCTTAAGACTAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGAA 26713 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||||||||| || || ||| | || ||||| ||||| || |||| Sbjct 26712 AGAGTTCTTCCATCTTCTAATTGCTTCCCCGCGAAGATTAAACGTTGTTGATCAGGTGGA 26653 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTA 15127 ||||| ||||| || ||| ||||| |||||| |||| || || || | || ||| | Sbjct 26652 ATTCCCTCCTTATCTTGAATCTTTGC-CTTTACATTTTCAATTGTGTC-CGATGGTTCAA 26595 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | ||||| || || || || || |||| ||||| |||||||| |||||| Sbjct 26594 CCTCTAAAGTGATTGTCTTTCCCGTCAATGTTTTGACAAAAATCTGCATA 26545 Score = 122 bits (134), Expect = 6e-23 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||| || || ||||| | || || |||||||| || |||||||| Sbjct 27000 CCACCTCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGAA 26941 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||||||||| || || ||| | || ||||| ||||| || |||| Sbjct 26940 AGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGGA 26881 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTA 15127 ||||| ||||| || ||| ||||| || || | || || || || | || ||| | Sbjct 26880 ATTCCCTCCTTATCTTGAATCTTTGC-CTTAACGTTCTCAATTGTGTC-CGATGGTTCAA 26823 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | ||||| || || || || ||||||| ||||| |||||||| |||||| Sbjct 26822 CTTCTAAAGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCATA 26773 >seq69 Length=29286 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | ||| || || || || | ||||| || ||||| || |||||||| Sbjct 8994 CCACCTCTTAGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGAT 9053 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | || ||||||| |||||||| ||||| | |||| ||||||||| || ||| Sbjct 9054 AGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGGG 9113 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||| ||||| ||| ||||||||| ||| | || ||||| || | ||| || Sbjct 9114 ATACCTTCTTTGTCTTGAATCTTTGCTTTT-ACATTCTCAATAGTGTCTGAAGGTTCAAC 9172 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || || ||||| || || || | ||||||||||||||| ||||| || Sbjct 9173 TTCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCATCTT 9223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357390797822660