Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq69 102 8e-17 seq124 95.1 1e-14 >seq69 Length=29286 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | || || ||| ||||| || | |||||||| ||||||||||||||||| Sbjct 8994 CCACCTCTTAGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGAT 9053 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | | || || | ||||||||||| |||||| ||||| ||||| || || Sbjct 9054 AGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGGG 9113 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || |||| | ||| | | ||| || | | || | ||||| | | || || Sbjct 9114 ATACCTTCTTTGT-CTTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAAC 9172 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || || || || | ||||||||||||||||||||| Sbjct 9173 TTCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCAT 9220 >seq124 Length=102498 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | | || ||| |||||||||| || ||||||||||| ||||||||||| Sbjct 27001 TCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGA 26942 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || | ||| |||| || || || ||| |||| || || || ||||| || || Sbjct 26941 AAGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGG 26882 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || |||||||| | | ||| | | || ||| | | || | ||||||| || | Sbjct 26881 AATTCCCTCCTTAT-CTTGAATCTTTGCCTTAACGTTCTCAATTGTGTCCGATGGTTCAA 26823 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | || || || |||| ||||| |||||||||||||| Sbjct 26822 CTTCTAAAGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCAT 26774 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 126902 AACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCG 126961 || || ||||| | || ||||| ||||||||||||||||| | || | ||| Sbjct 26529 AAGACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCAGAGAGAGTTCTTCCATCC 26470 Query 126962 TCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCC 127021 |||| || || || || |||| || ||||| ||||| || || || || ||||| ||| Sbjct 26469 TCTAATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGTGGAATTCCTTCCTTATCC 26410 Query 127022 GTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGT 127080 ||| | | ||| || | | ||| | ||||||| || ||||| | || | || Sbjct 26409 -TGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACTTCCAAAGTGATTGT 26351 Query 127081 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || |||| ||| || |||||||||||||| Sbjct 26350 CTTCCCTGTCAAAGTCTTAACAAAAATCTGCAT 26318 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 126902 AACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCG 126961 || || ||||||| || ||||||||||| ||||||||||| | || | ||| Sbjct 26757 AAGACTAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTTCTTCCATCT 26698 Query 126962 TCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCC 127021 |||| || || || ||| |||| || || || ||||| || || || |||||||| | | Sbjct 26697 TCTAATTGCTTCCCCGCGAAGATTAAACGTTGTTGATCAGGTGGAATTCCCTCCTTAT-C 26639 Query 127022 GTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGT 127080 ||| | | || ||| | | ||| | ||||||| || || || | || | || Sbjct 26638 TTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACCTCTAAAGTGATTGT 26579 Query 127081 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || |||| ||||| |||||||||||||| Sbjct 26578 CTTTCCCGTCAATGTTTTGACAAAAATCTGCAT 26546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499159522240