Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq69 107 2e-18 seq124 98.7 9e-16 >seq69 Length=29286 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182 || ||||| || | |||| || || |||||||| ||||| ||||| | || || Sbjct 9003 AGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGATAGAGTCCTA 9062 Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242 || |||||||||||||| || | |||| || || || || || || || |||||| Sbjct 9063 CCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGGGATACCTTCT 9122 Query 45243 TTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTA 45302 || |||||||| ||| ||| | || | ||||| |||| || ||||| | || Sbjct 9123 TTGTCTTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAACTTCCAATGTG 9182 Query 45303 ACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || || || |||| ||||||||||||||| |||||| Sbjct 9183 ATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCATC 9221 >seq124 Length=102498 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || | || ||||| || | ||| | || || || ||||||||||| ||||| Sbjct 27003 ATTCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCA 26944 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || ||||| || |||||| | || || ||||| || || || Sbjct 26943 GAAAGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGT 26884 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || |||||||||| | |||| | | || | || | ||||| || | || Sbjct 26883 GGAATTCCCTCCTTATCTTGAA-TCTTTGCCTTAACGTTCTCAATTGTGTCCGATGGTTC 26825 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | || || || || | ||||| |||||||| ||||| Sbjct 26824 AACTTCTAAAGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCAT 26774 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || | ||| || || |||| ||| | || || || ||||||||||| ||||| Sbjct 26775 ATACCACCTCTGAGTCTTAAGACTAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCA 26716 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || ||||| || || ||| | || || ||||| || || || Sbjct 26715 GAAAGAGTTCTTCCATCTTCTAATTGCTTCCCCGCGAAGATTAAACGTTGTTGATCAGGT 26656 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || ||||||||||| ||| || | ||| | ||||| || | || Sbjct 26655 GGAATTCCCTCCTTATCTTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCA 26596 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| | || || || || | ||||| |||||||| ||||| Sbjct 26595 ACCTCTAAAGTGATTGTCTTTCCCGTCAATGTTTTGACAAAAATCTGCAT 26546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001640588960