Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq69 100 2e-16 seq124 95.1 8e-15 >seq69 Length=29286 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 39507 CAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATC 39566 || |||||| |||||||| || ||||| ||||| ||||| | | | | | || Sbjct 9008 CAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGATAGAGTCCTACCGTC 9067 Query 39567 GTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC 39626 ||||||||||| || |||| || | |||||| ||||| | || | ||||||||||| Sbjct 9068 TTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGGGATACCTTCTTTGTC 9127 Query 39627 GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686 || ||| ||| | || | | ||||||| ||| || ||||| || || || Sbjct 9128 TTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAACTTCCAATGTGATGGT 9187 Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || |||||||||||||| || |||||||| Sbjct 9188 CTTCCCAGTTAAAGTTTTTACAAAAATCTGCAT 9220 >seq124 Length=102498 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 || |||||||||||| || ||||| ||||| ||||| | | | | | |||| || Sbjct 26526 ACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCAGAGAGAGTTCTTCCATCCTCT 26467 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 ||||| ||||| |||| ||||||||||| ||||| | || | ||||| || || | Sbjct 26466 AATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGTGGAATTCCTTCCTTATC-CTG 26408 Query 39631 ATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687 | | |||| |||| || | | | |||||| | ||| || |||||||| ||||| Sbjct 26407 AATCTTTGCCTTTACAT--TTTCAATTGTGTCCGATGGTTCAACTTCCAAAGTGATTGTC 26350 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || ||||| || || || |||||||| Sbjct 26349 TTCCCTGTCAAAGTCTTAACAAAAATCTGCAT 26318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347368431535508