Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq124 194 4e-44 seq69 161 2e-34 >seq124 Length=102498 Score = 194 bits (214), Expect = 4e-44 Identities = 176/222 (79%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| |||||||| || | || | ||||||||||||||| ||||||||||| | |||||| Sbjct 26995 TCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGT 26936 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | ||||| ||||||||||| | |||||||| || || ||||| || Sbjct 26935 TCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGGAATTCC 26876 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || || |||||||| ||| ||| ||||||||||| |||||||| ||| ||||| | Sbjct 26875 CTCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTGTCCGATGGTTCAACTTCTAA 26816 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | |||||||||||||| ||||| || || | ||||| Sbjct 26815 AGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCAT 26774 Score = 170 bits (188), Expect = 4e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||| || || | || | ||||||||||||||| ||||||||||| | |||||| Sbjct 26767 TCTGAGTCTTAAGACTAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGT 26708 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | ||||| || |||||||| | |||||||| || || ||||| || Sbjct 26707 TCTTCCATCTTCTAATTGCTTCCCCGCGAAGATTAAACGTTGTTGATCAGGTGGAATTCC 26648 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || || |||||||| ||| ||| || || ||||| |||||||| ||| || || | Sbjct 26647 CTCCTTATCTTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACCTCTAA 26588 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | |||||||| ||||| ||||| || || | ||||| Sbjct 26587 AGTGATTGTCTTTCCCGTCAATGTTTTGACAAAAATCTGCAT 26546 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||| || || | || | ||||||||| ||||||||||||||||| | ||||| Sbjct 26539 TCTGAGTCTTAAGACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCAGAGAGAGT 26480 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||| || | ||||| ||||| ||||| | || ||||| || || ||||| || Sbjct 26479 TCTTCCATCCTCTAATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGTGGAATTCC 26420 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || || ||||| ||| ||| || || ||||| |||||||| ||| ||||| | Sbjct 26419 TTCCTTATCCTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACTTCCAA 26360 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| ||||||||||| || || || | ||||| Sbjct 26359 AGTGATTGTCTTCCCTGTCAAAGTCTTAACAAAAATCTGCAT 26318 >seq69 Length=29286 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| |||||||| || | ||| | ||| ||||| ||||||||||||||||| | ||||| Sbjct 8999 TCTTAGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGATAGAGT 9058 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || || ||||| | || || || || ||||| || || ||||| || || || || || Sbjct 9059 CCTACCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGGGATACC 9118 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||||||||| ||| || || |||||||| ||||| ||| ||| ||||| | Sbjct 9119 TTCTTTGTCTTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAACTTCCAA 9178 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| || || ||||||||||| || | ||||| Sbjct 9179 TGTGATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCAT 9220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109477676595692