Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq97 352 3e-92 seq45 262 4e-65 >seq97 Length=14183 Score = 352 bits (390), Expect = 3e-92 Identities = 1194/1859 (64%), Gaps = 26/1859 (1%) Strand=Plus/Minus Query 47013 GTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTA 47072 |||| || |||||| || ||||| ||||| ||| |||| |||||||||||||| Sbjct 9725 GTTCTTAGATAATAAATGCCAGTTTTTAATCCTTTTTTCCAGCCATAGAAATGCATCGAT 9666 Query 47073 GTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATA 47132 | ||| || | | | ||| | | ||||||||||| | ||| ||| ||| |||| Sbjct 9665 GATAACTTTGCAAAGTTAGCATTTTCCATATGAATATTTAAAGACTGAGACTGGCAAATA 9606 Query 47133 AATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTT 47192 ||| || ||||| || |||||||| | | | |||| |||||||| |||||| Sbjct 9605 TATGGGCCCCTATCTGCAGCCATATCGATTACTGTCTTTTGCTTAATCTCCCAAACTGTT 9546 Query 47193 TTATAAATTTGTTTAATGTCTTCTGGGAGATTAG---TATTTTGAATAGATCCTCCgttt 47249 ||||||| || | ||| || |||| || ||||||||||| ||| ||| Sbjct 9545 TTATAAAGTTCGCGGACGTCCTCCGGGATTGTAAGAATATTTTGAATACTTCCATTATTT 9486 Query 47250 tctataattttgttttttaattcatttga--ccaaagttttcgttcagttaatgttttta 47307 | || || || || ||||| | | | | ||| || ||||| || || | Sbjct 9485 GCAATGATATT-TTGTTTAAGCC-TGTCATCCCATAGCCCAAGTTCAAGCAAGTCATTGA 9428 Query 47308 aAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTAC 47367 | ||||||||| || | |||||| ||||| ||||| ||||| ||||||||| Sbjct 9427 GTAAATGAGGATTCACTACAAAAAATTCACCAGAAAGTACCCTACGATGATATATATTTG 9368 Query 47368 TTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCA 47427 ||| ||||||| | | ||| || || || || ||||| | || || || ||||||| Sbjct 9367 AAGTAAATGGTTCAAAACTTTCGTTGTTACCTAATATTTGCGAGGTAGACGCAGTAGGCA 9308 Query 47428 TGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTT 47487 | | |||| || | ||| | | ||||| || ||| | Sbjct 9307 TTGGAGCAATTAGAAGTGAATTACGGAGCCCATACTTAGAAATCCTTTCTTTAAGTGAAT 9248 Query 47488 TCCAATCCCAAAGATCTGAT---GGAACAACATTCCAAAAATCATATTGAAGAATTCCTT 47544 ||| || ||||| | || || ||| ||| | ||| |||| ||||| |||| Sbjct 9247 CCCAGTCGCAAAGCCCAGAATCAGGCTTAACTCCCCACATGTCAAATTGTAGAATACCTT 9188 Query 47545 TACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAAC 47604 |||| || || ||| ||| |||| ||| || || | | || ||||| || |||| Sbjct 9187 TACTCGCGGGTGACCCAGAATACGTTTCATACGGCCCATCTTTTTCTGCGAGCTCGCAAC 9128 Query 47605 TTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGC-T 47663 | || || | || |||||| || |||||| || | | |||| ||||| || | Sbjct 9127 TAGCCTCGAGCGCCGCATAATAAATAACTTCAAAAATCTCCTTATTTAATTTCCTAGCCT 9068 Query 47664 TCTGATGATTCAAAAGG-ATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACC 47722 ||| ||||||| | || ||| || |||||| | |||||||||||| Sbjct 9067 TCTC-TGATTCATATGGCATACGAAGCATCATA-AAGCAATCTGCAAGTCCTTGAACACC 9010 Query 47723 AATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTT 47782 ||| |||| || | ||| || ||| || | | |||||| | | ||| | Sbjct 9009 AATTCCAAGCGGGCGATGTTTTAGATTTGAGTTTTTACATTCTGGGAGAGAATAATATCC 8950 Query 47783 TATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATT 47842 ||| | |||||| |||| | || ||| |||| |||| Sbjct 8949 GTGATCAACAATTTTGTTTAAATTCCTCGTAATAACTCTCGTAACTTCCTTTAACTTATC 8890 Query 47843 AAAATCAAAC---TTGTTATTTAT---AACAAACCTATTAAGTGCTATAGATGCTAGATT 47896 ||| || || ||||||| | | ||||||| | ||| | || || || || || Sbjct 8889 AAAGTCGAATGTTTTGTTATCTTTGTCAACAAACTTCGGAAGACCAATGGACGCCAGGTT 8830 Query 47897 ACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACA 47956 ||| ||||| | ||||||| |||| || | ||| ||||| | |||| ||||| | Sbjct 8829 ACAAACAGCAATTTCATTTGCGCTAGTGTACTCTATAATTTCGGTGCATAAATTACTGGA 8770 Query 47957 TTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCAT 48016 ||||| |||||||||| || ||| | | || ||||||||||| || Sbjct 8769 AACAATAGTCCCCAAATTTTTCTGGTTACTCTTACTATTCGCAGCGTCCTTGTAGCAGAT 8710 Query 48017 AAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTT 48076 ||||| ||||| ||||| || |||| || | ||| | ||||| || ||||| Sbjct 8709 GAAAGGCGTTCCTGTTTCAATTTGAGCTTGTAGGATTAAAAACCAAAGTTTCTGCGCCTT 8650 Query 48077 TATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATC 48136 ||| ||| | | | |||||| | ||||| |||| ||| ||||| Sbjct 8649 CATAGTTTTTCTTCCGCGGCCCTGCTTTTCGTACTCTTCATATAGTTTCTTAAACTCATC 8590 Query 48137 CCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATC 48196 || | |||| | ||||| ||||||| |||||||| | | |||||| | || Sbjct 8589 ACCCCAAACATCTTGCAACCCCCTGCATTCATCCGGACACATAAGAGTCCAATCTTGGTC 8530 Query 48197 ATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGT 48256 || | || || |||||||| ||| || | |||||| || ||| | || | Sbjct 8529 TTTCTCAACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGGCA 8470 Query 48257 TCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATG 48316 ||| | || || || ||| |||| || | | ||||| ||| |||| | ||| |||| Sbjct 8469 TCTCATCTCCTCTTTTCCATGATTCTTTCTTATTTCAATAAACTCCACAACATCTACATG 8410 Query 48317 CCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATA 48376 ||| || || ||||| ||||| || |||| ||||| || ||||| || ||||| Sbjct 8409 CCACGGCTCCAAATAAATTGCAATCGCACCCTTGCGTTTCCCTCCACCTTGGTCAATATA 8350 Query 48377 TCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGT 48436 ||| ||||||| |||||||| | ||||||||| | | ||||| || | |||||||| Sbjct 8349 TCTAGCAGTATCATTATAAACGCGTAACATTGGAATCAGTCCATTAGACCTTCCATTGGT 8290 Query 48437 TCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGC 48496 ||| |||||| || | |||| |||||||| | || | || | ||| || || Sbjct 8289 ACCCCGAATATACGAGCCCGTTCCTCTAATATTACTCACTGCCACTCCAAGACCGCCGGC 8230 Query 48497 CATTTTAG--ATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCA 48554 | ||| ||||| | |||| | | || || ||| |||| || |||||| ||| Sbjct 8229 AGTCTTACTAATATTTG--CACATTTTGTTAGCGTGTCAAAAATACCATCTATAGAATCC 8172 Query 48555 TCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAAT 48614 ||| || | | || ||||||| |||||||| || ||| || || || || Sbjct 8171 TCTGGTATTCTGAGTAAAAAACAAGATGACATTTGAGGTCTTGGAGTGCCGGAGTTGAAA 8112 Query 48615 AATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACA 48674 | || || | ||||| |||| | || | ||||| |||||||||||||| | || Sbjct 8111 AGCGTAGGTGTAGCATGGGTAAAATACTTTTGCGATAATAATTTATATGTTTCGAGTGCA 8052 Query 48675 GAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTT 48734 | || ||||| | ||||||||| ||| || | ||||| | || ||| ||||| Sbjct 8051 GCCTCGATATCACCGCAATGTATACCACAAGAAACTCTCATTAGAAGATGTTGTGGTCTC 7992 Query 48735 TCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAA 48794 || ||||| ||||||| ||| | | |||||| || |||| || ||||| || ||||| Sbjct 7991 TCTACAATCTTGTTATCAATTCTGAGAAGATAGGACCTTTCTAAAGTTTTGAATGCAAAA 7932 Query 48795 TAGTTGTATGAAAAGTCGTTATCATTAAT-AATTGATGAATTTATTCTTTCCTTATGTT 48852 || | ||| ||| || || | | | | |||| |||||| ||| |||| |||| || Sbjct 7931 TAATCATATTCAAAATC-TTTTGAGAAGTCAATTTTTGAATTAATTATTTCTTTATTTT 7874 >seq45 Length=29048 Score = 262 bits (290), Expect = 4e-65 Identities = 590/863 (68%), Gaps = 35/863 (4%) Strand=Plus/Plus Query 18671 TTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATT 18730 |||||||||| | ||||| |||||||||||||| ||||| || | | ||| ||| | Sbjct 19170 TTTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTGGAGTGAAATAAGAT 19229 Query 18731 CCATAAAATCAAATGGATTTTTTACATTATATAtttttttGA-ATCCTAATTCTAATAGT 18789 |||| |||| || ||||| ||||| || ||||| || |||| | | || || Sbjct 19230 CCATCCAATCGAAGGGATTAGAAACATTGTAAATTTTGGGGATATCC-AGAGCAAAAAGG 19288 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATA--TC-ACAATTCATTCCTATT 18846 |||||||| |||||||||| ||||||| || | |||| || | | |||||||| || Sbjct 19289 AGTCTATCAGCTACAAATTCAATATAT-TGAGC--CATAAGTCTAGAGTTCATTCCAATA 19345 Query 18847 AATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATA 18906 | | |||||| |||| || |||||| | | ||||| || || || ||||| ||| Sbjct 19346 AGATCAACAGGAAGTGAGTCACAAAGAAAGTTTCTTTCTACATCAACAGCTTCTGAGATA 19405 Query 18907 ATAGATACAACTCTATCTTCATTAGGAGGGTATA--GAAGATGTTTAAACATCAAACATG 18964 || | |||||| || | || |||| |||| ||| | || || || | Sbjct 19406 ATTTGTTGTACTCTA--GAAGTTGGTAGTTTATATTTAAGAGCTTTGTATATTAAGCAAG 19463 Query 18965 CAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAG 19024 |||| ||| ||||| ||| || || | || || | ||||||||| ||||| | |||| Sbjct 19464 CAAAGTCAGCATGTAATCCTTCATCACGGCTAATAAGTTCATTAGAGAATGTAAGTCCAG 19523 Query 19025 GCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT-CCAGAAAAGAATATA 19083 |||| ||||| | ||||| | ||| ||||||| | |||| | | |||||||| | || Sbjct 19524 GCATAAGTCCACGCTTTTTAAGCCAAAATATAGCA-CAAAAGCTACCAGAAAAAAGAATT 19582 Query 19084 CCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATT-ATTATGAAT 19142 |||||||| || || || | | || | | |||| || | ||| || ||||| || Sbjct 19583 CCTTCTACAGC-ACAGAATCCAATAAT-TCTCTCAGCAA--AAGATCTTTCATTATTCAT 19638 Query 19143 CCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAA 19202 |||||| |||||| || || |||||||| || | || |||| | ||| Sbjct 19639 CCATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATATGAGAAATAGCCTCAAA 19698 Query 19203 TAGATACAT---ACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACAT 19259 || ||| ||| || | | | || ||| |||| || || || || || | Sbjct 19699 AAG---CATTTGACGTTCTTTTATTTCAGTAATATATCTGTCAATTAACAAGGAATATGT 19755 Query 19260 TTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTAT 19319 ||| |||||| | || |||||||| |||||| | ||| | ||||||||||| || Sbjct 19756 TTCATTATGAATTTGCTCAATAGCCATTTGAAATGCATAATACATTCTTGCTTCTGGGAT 19815 Query 19320 CTGTACTTCAC-TACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTG 19378 |||| ||| | || |||| | | |||| ||||| |||| || ||||||||||| | Sbjct 19816 ATGTATTTCTCTTAGGAAAT-TGACAGCCAAGTTTTCCATAACAATACCATCACTAGCAG 19874 Query 19379 CAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCA---TCTGAGGTTAA-TGTATTC 19434 |||| || |||| || | ||||||||||||| | ||| ||| |||| | | | Sbjct 19875 CAAAGAAAGCTAGGACGTATTTAATAAAATGTCTCTCAGGGTCT----TTAAGACTTTCC 19930 Query 19435 CAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCT 19494 ||||| || |||||| | ||| || | |||||| |||||| || || |||||| Sbjct 19931 CAATCTCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAACCCAAAACGATGCTTCTGCT 19990 Query 19495 TTTTTATACATGTTCCATATATC 19517 ||||||||||| ||| ||||| Sbjct 19991 TTTTTATACATAAACCAAATATC 20013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562106860724640