Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq45 183 4e-41 >seq45 Length=29048 Score = 183 bits (202), Expect = 4e-41 Identities = 604/926 (65%), Gaps = 35/926 (4%) Strand=Plus/Plus Query 36827 TTAAAAATCTTCATCTAACGTAAATTTTATTTCCTTATTACTATTCATAACTCCCATTTT 36886 ||| || ||| ||||||| ||| ||| || | | | || ||||||||| | Sbjct 19111 TTAGAATTCTGCATCTAAGTCAAACTTTTGGTCATCTTGATTAACCATAACTCCAGCCAT 19170 Query 36887 TTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTC 36946 |||||||||||| |||| |||| || ||||| || || |||| ||||| ||| || Sbjct 19171 TTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTGGAGTGAAATAAGATC 19230 Query 36947 CATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGATAATTCCTTC----- 37001 ||| |||| || |||||||| ||| || || | |||| ||| Sbjct 19231 CATCCAATCGAAGGGATTAGAAACATTGTAAATTTTGGG----GATA--TCCAGAGCAAA 19284 Query 37002 -AGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAAT 37060 || || ||||| || |||||||| || |||| | ||| ||| | |||| || ||||| Sbjct 19285 AAGGAGTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGTTCATTCCAAT 19344 Query 37061 TAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAAC 37120 || | || |||| || || |||||| | |||||| ||||| ||| | Sbjct 19345 AAGATCAACAGGAAGTGAGTCACAAAGAAAGTTTCTTTCTACATCAACAGCTTCTGAGA- 19403 Query 37121 TATATTAACAATAACTTCTTCAGTTGGGGG---ATATTTTAAATATTTAAACAATAAACA 37177 || ||| || || |||||| | |||||| | | ||| | | ||| || Sbjct 19404 TA-ATTTGTTGTA-CTCTAGAAGTTGGTAGTTTATATTTAAGAGCTTTGTATATTAAGCA 19461 Query 37178 TGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCC 37237 ||||| ||| |||||| |||||||| | || || | ||||||||| || || | ||| Sbjct 19462 AGCAAAGTCAGCATGTAATCCTTCATCACGGCTAATAAGTTCATTAGAGAATGTAAGTCC 19521 Query 37238 TGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT-CCAGAAAAGAAAA 37296 ||||| | || | ||||||| ||||||||| || |||||| | |||||||| | || Sbjct 19522 AGGCATAAGTCCACGCTTTTTAAGCCAAAATATAGCA-CAAAAGCTACCAGAAAAAAGAA 19580 Query 37297 TACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAA 37356 | ||||| || || ||| | | || | | | |||| | || | || | | Sbjct 19581 TTCCTTCTACAGCACAGAATCCAATAATTCTCTCAGCAAAAGAT---CTTTCATTATTCA 19637 Query 37357 TCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTA 37416 ||||||| ||| ||| ||||| || |||||| ||| ||| || | | Sbjct 19638 TCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATATGAGAAATAGCCTCAA 19697 Query 37417 AGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTT 37476 | || | | ||||| | || || ||||| | ||||||| || ||| ||| Sbjct 19698 AAAGCATTTGACGTTCTTTTATTTCAGTAATATATCTGTCAATTAACAAGGAATATGTTT 19757 Query 37477 CAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATT 37536 || ||||| | |||||||| || ||||| ||||| | || ||||| | | | Sbjct 19758 CATTATGAATTTGCTCAATAGCCATTTGAAATGCATAATACATTCTTGCTTCTGGGATAT 19817 Query 37537 GAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAA 37596 | | || | | || | ||| |||||||| |||| || ||||||||||| |||| Sbjct 19818 GTATTTCTCTTAGGAAATTGACAGCCAAGTTTTCCATAACAATACCATCACTAGCAGCAA 19877 Query 37597 AGAAAGCAAGAACATATTTTATAAAATGTCTTTCA---TCATTTGATAATTTTTTCCAAT 37653 ||||||| || || ||||| ||||||||||| ||| || ||| | | ||| ||||| Sbjct 19878 AGAAAGCTAGGACGTATTTAATAAAATGTCTCTCAGGGTC-TTTAAGA--CTTTCCCAAT 19934 Query 37654 CATTAATATCTTTTGATAAATCAA---CTTCATCAACGGTCCAAAAACTTGCCAATGCAC 37710 | || |||||| ||| |||| ||||| ||| |||||| ||| ||| Sbjct 19935 CTCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAAC---CCAAAACGATGCTTCTGCTT 19991 Query 37711 GTTTATACATCGTCCAAATATCATTA 37736 ||||||||| ||||||||| ||| Sbjct 19992 TTTTATACATAAACCAAATATCTTTA 20017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592314756507040