Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq124 179 3e-40 seq69 170 2e-37 >seq124 Length=102498 Score = 179 bits (198), Expect = 3e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | | ||| |||||||| | || || || ||||| ||||||||||| | | Sbjct 26544 CCACCTCTGAGTCTTAAGACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCAGAG 26485 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| || |||||||| |||||||| || |||||||||||||| || ||| Sbjct 26484 AGAGTTCTTCCATCCTCTAATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGTGGA 26425 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||| ||||| ||| |||||| |||| | ||||| || | ||| ||| Sbjct 26424 ATTCCTTCCTTATCCTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACT 26365 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| || || || || ||||| || ||||| |||||||| Sbjct 26364 TCCAAAGTGATTGTCTTCCCTGTCAAAGTCTTAACAAAAATCTGCAT 26318 Score = 161 bits (178), Expect = 8e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | | ||| |||||||| | || || |||||||| ||||||||||| | Sbjct 26772 CCACCTCTGAGTCTTAAGACTAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGAA 26713 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| || |||||||| || || || || ||||| |||||||| || ||| Sbjct 26712 AGAGTTCTTCCATCTTCTAATTGCTTCCCCGCGAAGATTAAACGTTGTTGATCAGGTGGA 26653 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || ||||||||||| ||| |||||| |||| | ||||| || | ||| || Sbjct 26652 ATTCCCTCCTTATCTTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACC 26593 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| || || || || || ||||| ||||| |||||||| Sbjct 26592 TCTAAAGTGATTGTCTTTCCCGTCAATGTTTTGACAAAAATCTGCAT 26546 Score = 152 bits (168), Expect = 4e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| ||||| | | || || ||||| | || || |||||||| ||||||||||| | Sbjct 27002 TTCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAG 26943 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | |||||| |||| || |||||||| ||||| || || ||||| |||||||| || | Sbjct 26942 AAAGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTG 26883 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| || || ||||||||||| ||| || || | || | ||||| || | ||| | Sbjct 26882 GAATTCCCTCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTGTCCGATGGTTCAA 26823 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | ||||| || || || || || ||||| ||||| |||||||| Sbjct 26822 CTTCTAAAGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCAT 26774 >seq69 Length=29286 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||||| | || || || || | ||||| || ||||| ||||||||||| | Sbjct 8994 CCACCTCTTAGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGAT 9053 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| || | || |||||||| || || ||||| |||| |||||||||||| || || Sbjct 9054 AGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGGG 9113 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| |||||||| ||| ||||||| | || | |||||| || | ||| ||| Sbjct 9114 ATACCTTCTTTGTCTTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAACT 9173 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||| || || || ||||||||||||||||| |||||||| Sbjct 9174 TCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCAT 9220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396277067018532