Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq97 123 1e-23 >seq97 Length=14183 Score = 123 bits (136), Expect = 1e-23 Identities = 297/446 (67%), Gaps = 4/446 (1%) Strand=Plus/Minus Query 25918 TTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGC 25977 || |||||| |||||||||||| ||| |||| ||| | ||| ||| | || | Sbjct 8529 TTTCTCAACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGGCA 8470 Query 25978 TCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTG 26037 |||||| || |||||||| ||||||||| ||| || | || || | || |||| || Sbjct 8469 TCTCATCTCCTCTTTTCCATGATTCTTTCTTATTTCAATAAACTCCACAACATCTACATG 8410 Query 26038 CCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTA 26097 ||| || || ||||| || |||| ||| || | ||| ||||||||||| || | || Sbjct 8409 CCACGGCTCCAAATAAATTGCAATCGCACCCTTGCGTTTCCCTCCACCTTGGTCAATATA 8350 Query 26098 TCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGT 26157 ||| ||||| ||||| |||| |||||||||| | |||| | || ||| || || Sbjct 8349 TCTAGCAGTATCATTATAAACGCGTAACATTGGAATCAGTCCATTAGACCTTCCATTGGT 8290 Query 26158 GCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCA-TG-AATACCGATTCCACCA 26215 | |||| | || || || |||||||| | || || | || | || || Sbjct 8289 ACCCCGAATATACGAGCCCGTTCCTCTAATAT--TACTCACTGCCACTCCAAGACCGCCG 8232 Query 26216 GCCCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCA 26275 || || |||| |||||| | || | || || ||||| || | ||| ||| Sbjct 8231 GCAGTCTTACTAATATTTGCACATTTTGTTAGCGTGTCAAAAATACCATCTATAGAATCC 8172 Query 26276 CCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAAT 26335 || |||| | |||||||||||| || | ||| | | || || || || || Sbjct 8171 TCTGGTATTCTGAGTAAAAAACAAGATGACATTTGAGGTCTTGGAGTGCCGGAGTTGAAA 8112 Query 26336 AATGTCGGTGTAGCATGAGTATAATA 26361 | || ||||||||||| ||| |||| Sbjct 8111 AGCGTAGGTGTAGCATGGGTAAAATA 8086 Score = 86.0 bits (94), Expect = 3e-12 Identities = 122/170 (72%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 25012 AATAAATTCTCCAGACAAAACTCTTC--TTATTGATAAGTTTGAAGTGAATGGTTCAAAA 25069 || |||||| ||||| | || || | | || ||| |||||||| |||||||||||| Sbjct 9408 AAAAAATTCACCAGAAAGTACCCTACGATGATATATA--TTTGAAGTAAATGGTTCAAAA 9351 Query 25070 CATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGC 25129 | ||| || || ||||| ||||| || ||||| || || |||||| || |||| || Sbjct 9350 CTTTCGTTGTTACCTAATATTTGCGAGGTAGACGCAGTAGGCATTGGAGCAATTAGAAGT 9291 Query 25130 GAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATC 25179 ||||| | | ||||| ||| |||| || ||| | | |||||| || Sbjct 9290 GAATTACGGAGCCCATACTTAGAAATCCTTTCTTTAAGTGAATCCCAGTC 9241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039148836700