Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq45 167 3e-36 >seq45 Length=29048 Score = 167 bits (184), Expect = 3e-36 Identities = 569/862 (66%), Gaps = 27/862 (3%) Strand=Plus/Plus Query 17866 TTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAAT 17924 |||| |||||||||||| | || || |||||||| || || |||| | ||| || | || Sbjct 19170 TTTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTGGAGTGAAATAAGAT 19229 Query 17925 TCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAATA 17984 ||| |||| || ||||||| || ||| ||||| ||| | | || Sbjct 19230 CCATCCAATCGAAGGGATTAGAAACATTGTAA-ATTTTGGGGATATCCAGAGCAAAAAGG 19288 Query 17985 A-TCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAA-TTCATACCTAGTAG 18042 | |||||| ||||||||||| | |||||| | ||| || || | ||||| || | || Sbjct 19289 AGTCTATCAGCTACAAATTCAATATATTGAGCCAT-AAGTCTAGAGTTCATTCCAATAAG 19347 Query 18043 TCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTAT 18102 | ||| || | ||| || ||| | | | |||| ||||||| ||| || || Sbjct 19348 ATCAACAGGAAGTGAGTCACAAAGAAAGTTTCTTTCTACATCAACAGCTTCTGAGATAAT 19407 Query 18103 GTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGC 18162 | | ||| ||||| |||| | ||||| | ||| | | || |||| ||| || || Sbjct 19408 TTGTTGTACTCTAGAAGTTGGTAGTTTAT-ATTTAAGAGCTTTGTATAT--TAAGCAAGC 19464 Query 18163 AAAATCAGTGTGTAAACCTTCATCTCTGGATATTAA-TTCGTTACTAAACGTTAACCCGG 18221 ||| |||| ||||| |||||||| | || || ||| ||| ||| || || | || | Sbjct 19465 AAAGTCAGCATGTAATCCTTCATCAC-GGCTAATAAGTTCATTAGAGAATGTAAGTCCAG 19523 Query 18222 GCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATAC 18281 |||| | || | ||||| ||||||||||| | || |||| |||||| | || | Sbjct 19524 GCATAAGTCCACGCTTTTTAAGCCAAAATATAGCACAAAAGCTACCAGAAAAAAGAATTC 19583 Query 18282 CCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTATC 18340 | || || |||| ||| | || | ||| ||||||||| || ||| || ||| Sbjct 19584 CTTCTACAGCAC-AGAATCCAATAATTCTCTCAGCAAAAGATCTTTCATTATTC---ATC 19639 Query 18341 CATTTTTGTGCCCATTCTCCTTNNNNNNNNA-TACACGGTATACTCTCTATAGCATTAAA 18399 ||||| |||||||||| ||| | | || | ||| ||||| | || Sbjct 19640 CATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCA-GAAATATGAGAAATAGCCTCAA- 19697 Query 18400 CAAATCATCT--TTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATT 18457 ||| ||| | |||||| || | ||||| |||| |||||||| ||||| || Sbjct 19698 -AAAGCATTTGACGTTCTTTTATTTCAGTAATATATCTGTCAATTAACAAGGAATATGTT 19756 Query 18458 TCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTC-GGGATA 18516 ||| ||| || || ||||| || ||||| |||| || ||| || || |||||| Sbjct 19757 TCATTATGAATTTGCTCAATAGCCATTTGAAATGCATAATACATTCTTGCTTCTGGGATA 19816 Query 18517 TTGAATCTCGC-TATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATG 18575 || || || | || |||| | | |||| || || |||| ||||| ||| || | Sbjct 19817 -TGTATTTCTCTTAGGAAAT-TGACAGCCAAGTTTTCCATAACAATACCATCACTAGCAG 19874 Query 18576 CGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATT 18635 | || || || | || |||||||| |||||| | ||| || || ||| | | ||| | Sbjct 19875 CAAAGAAAGCTAGGACGTATTTAATAAAATGTCTCTCAGGGTCTTTAAGACTTTCCCAAT 19934 Query 18636 CATCTA-TATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGT 18694 | |||| |||||| || |||| ||||| | |||||| |||| ||| || | | Sbjct 19935 C-TCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAACCCAAAACGATGCTTCTGCTTTT 19993 Query 18695 TTGTACATTTTATAAATATCTT 18716 || ||||| ||||||||| Sbjct 19994 TTATACATAAACCAAATATCTT 20015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731869475041600