Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq69 181 2e-40 seq45 170 4e-37 seq124 167 5e-36 >seq69 Length=29286 Score = 181 bits (200), Expect = 2e-40 Identities = 187/242 (77%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATA 192357 ||| ||||| ||||||||| || | ||||| || || ||||||| ||| ||| || ||| Sbjct 8983 GTTCAATAACACCACCTCTTAGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGA-ATA 9041 Query 192358 TTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGT 192417 || |||||||||| || | | || ||||||||||| ||||||||||| | | |||| Sbjct 9042 TTGTAATCAGATAGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGT 9101 Query 192418 TGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCT 192477 ||||||||||| || |||||||| ||||| || || ||||||||| |||| ||| Sbjct 9102 TGATCAGGTGGGATACCTTCTTTGTCTTGAATCTTTGCTTTTACATTCTCAATAGTGTCT 9161 Query 192478 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || | ||| ||||| | || ||||| || |||||||| ||||| | ||| |||||||| Sbjct 9162 GAAGGTTCAACTTCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCATC 9221 Query 192538 TT 192539 || Sbjct 9222 TT 9223 >seq45 Length=29048 Score = 170 bits (188), Expect = 4e-37 Identities = 481/727 (66%), Gaps = 26/727 (4%) Strand=Plus/Plus Query 49652 TCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATTT 49711 |||||| ||||||||||||| |||||| | ||| | | | | ||||| || ||||| | Sbjct 19291 TCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGTTCATTCC-AATAAGAT 19349 Query 49712 AAATGGTAA-TGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatca 49770 || | || || ||| || ||| | | |||||| || ||||||| | || || Sbjct 19350 CAACAGGAAGTGAGTCACAAAGAAAGTTTCTTTCTACATCAACAGCTTCTGAGATAAT-- 19407 Query 49771 taattatattatttt--ttgataatttatatttaatatgattcgcatatattaaACATGC 49828 | || || | | ||| || ||||||||||| | | || | |||||||| || || Sbjct 19408 TTGTTGTACTCTAGAAGTTGGTAGTTTATATTTAAGA-GCTTTG--TATATTAAGCAAGC 19464 Query 49829 AAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGG 49888 ||| |||| |||||| || || || | |||| ||||||| || || | ||| || Sbjct 19465 AAAGTCAGCATGTAATCCTTCATCACGGCTAATAAGTTCATTAGAGAATGTAAGTCCAGG 19524 Query 49889 CATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACC 49948 ||| | ||| | |||||||||||||||||| | ||| |||| |||||| | || || Sbjct 19525 CATAAGTCCACGCTTTTTAAGCCAAAATATAGCACAAAAGCTACCAGAAAAAAGAATTCC 19584 Query 49949 CTCGACA-CACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAT-ATC 50006 || ||| ||| ||| | || ||||| | |||| || | |||| || | ||| Sbjct 19585 TTCTACAGCAC-AGAATCCAATAATTCTCTCAGCAAA---AGATCTTTCAT-TATTCATC 19639 Query 50007 CAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAAT 50066 || || | ||||| |||||||| ||||| | | || |||| ||||| | || Sbjct 19640 CATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATATGAGAAATAGCCTCAA-- 19697 Query 50067 AATTCAttt--ttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTT 50124 || ||||| ||| | ||||| || ||||| ||| Sbjct 19698 AAAGCATTTGACGTTCTTTTATTTCAGTAATATATCTGTCAATTAACAAGGAATATGTTT 19757 Query 50125 CAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCT-GAATAC 50183 || ||| | || ||||| |||||||||| |||| | |||||||||| | ||| Sbjct 19758 CATTATGAATTTGCTCAATAGCCATTTGAAATGCATAATACATTCTTGCTTCTGGGATA- 19816 Query 50184 TGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCG 50243 || | ||| | ||| || | || || || |||||||||||| || || Sbjct 19817 TGTATTTCTCTTAGGAAATTGACAGCCAAGTTTTCCATAACAATACCATCACTAGCAGCA 19876 Query 50244 AAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGAT 50303 ||||| |||| |||||||||||||||||| | ||| ||||| | | |||||||| | Sbjct 19877 AAGAAAGCTAGGACGTATTTAATAAAATGTCTCTCAGGGTCTTTAAGACTTTCCCAATCT 19936 Query 50304 TCAAGATCGTTTGA--TAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTT 50361 | ||| |||| ||| || | ||||| | |||||| |||||| | | ||||| Sbjct 19937 CTAGTATC--TTGACTTAAGTCAATCTCTTCAGTAACCCAAAACGATGCTTCTGCTTTTT 19994 Query 50362 TATACAT 50368 ||||||| Sbjct 19995 TATACAT 20001 >seq124 Length=102498 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| || | ||| |||||||||||||| | |||||| |||||| |||||| Sbjct 26775 ATACCACCTCTGAGTCTTAAGACTAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCA 26716 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | |||| || ||||| || || || |||||||| | |||||||||||| Sbjct 26715 GAAAGAGTTCTTCCATCTTCTAATTGCTTCCCCGCGAAGATTAAACGTTGTTGATCAGGT 26656 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || |||||||| || || |||||||| || | || || | ||| Sbjct 26655 GGAATTCCCTCCTTATCTTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCA 26596 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||| ||| || || || || || |||||||| | ||| |||||||| Sbjct 26595 ACCTCTAAAGTGATTGTCTTTCCCGTCAATGTTTTGACAAAAATCTGCAT 26546 Score = 161 bits (178), Expect = 2e-34 Identities = 176/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||||||||| || | ||| |||||||| ||||| | ||| ||| || ||||| ||||| Sbjct 26547 ATACCACCTCTGAGTCTTAAGACTAAATGCAAAGTGGACTCCTTTTGA-ATATTGTAATC 26489 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||| | |||| | |||| || ||||| || || ||||||||||| | |||||||||||| Sbjct 26488 AGAGAGAGTTCTTCCATCCTCTAATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGG 26429 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| |||||||| ||||| || || || |||||||| || | || || | ||| Sbjct 26428 TGGAATTCCTTCCTTATCCTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTC 26369 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| || || || || || || || |||| ||| |||||||| Sbjct 26368 AACTTCCAAAGTGATTGTCTTCCCTGTCAAAGTCTTAACAAAAATCTGCAT 26318 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||||||| | ||||| ||||||||||| | |||||| |||||| |||||| Sbjct 27003 ATTCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCA 26944 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | |||| || ||||| || || || |||||||| | |||||||||||| Sbjct 26943 GAAAGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGT 26884 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || |||||||| || || || || || || | || || | ||| Sbjct 26883 GGAATTCCCTCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTGTCCGATGGTTCA 26824 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||| || || || || || |||||||| | ||| |||||||| Sbjct 26823 ACTTCTAAAGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCAT 26774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984476518632600