Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq69 174 3e-38 seq124 149 1e-30 seq45 123 5e-23 >seq69 Length=29286 Score = 174 bits (192), Expect = 3e-38 Identities = 180/236 (76%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 |||| ||||||||| |||| ||||| || || ||||||| ||| || |||||| ||| Sbjct 8988 ATAACACCACCTCTTAGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAA 9047 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || |||| || | |||| ||||||||||| |||||||| || | | |||||| ||| Sbjct 9048 TCAGATAGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCA 9107 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || |||||||| ||||| || || ||||||||| ||||| ||||| | | Sbjct 9108 GGTGGGATACCTTCTTTGTCTTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGT 9167 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| | || ||||| || |||||||| ||||| | || |||||||| || Sbjct 9168 TCAACTTCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCATCTT 9223 >seq124 Length=102498 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| |||| ||| |||||||| ||||| | ||| || |||||| ||||| Sbjct 26547 ATACCACCTCTGAGTCTTAAGACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCA 26488 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | | || || ||||| || || ||||| ||||| | |||||| |||||| Sbjct 26487 GAGAGAGTTCTTCCATCCTCTAATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGT 26428 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| ||||| || || || |||||||| || || || || | ||| Sbjct 26427 GGAATTCCTTCCTTATCCTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCA 26368 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| || || || || || || || |||| || |||||||| Sbjct 26367 ACTTCCAAAGTGATTGTCTTCCCTGTCAAAGTCTTAACAAAAATCTGCAT 26318 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| |||| ||| |||||||||||||| | |||||| ||||| ||||| Sbjct 26775 ATACCACCTCTGAGTCTTAAGACTAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCA 26716 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | | || || ||||| || || || || ||||| | ||||| |||||| Sbjct 26715 GAAAGAGTTCTTCCATCTTCTAATTGCTTCCCCGCGAAGATTAAACGTTGTTGATCAGGT 26656 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || |||||||| || || |||||||| || || || || | ||| Sbjct 26655 GGAATTCCCTCCTTATCTTGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCA 26596 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| ||| || || || || || |||||||| | || |||||||| Sbjct 26595 ACCTCTAAAGTGATTGTCTTTCCCGTCAATGTTTTGACAAAAATCTGCAT 26546 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||||||||| ||||| ||||||||||| | |||||| ||||| ||||| Sbjct 27003 ATTCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCA 26944 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | | || || ||||| || || || || ||||| | ||||| |||||| Sbjct 26943 GAAAGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGT 26884 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || |||||||| || || || || || || || || || | ||| Sbjct 26883 GGAATTCCCTCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTGTCCGATGGTTCA 26824 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| ||| || || || || || |||||||| | || |||||||| Sbjct 26823 ACTTCTAAAGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCAT 26774 >seq45 Length=29048 Score = 123 bits (136), Expect = 5e-23 Identities = 341/510 (67%), Gaps = 16/510 (3%) Strand=Plus/Plus Query 38833 TTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAAT 38892 |||| ||||| ||| | ||||| || || || ||||| |||| | ||| || | || Sbjct 19170 TTTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTGGAGTGAAATAAGAT 19229 Query 38893 TCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATA-CATATAAT 38951 ||| |||| || ||||| ||| ||| ||||| |||| | | || | | Sbjct 19230 CCATCCAATCGAAGGGATTAGAAACATTGTAA-ATTTTGGGGATATCCAGAGCAAAAAGG 19288 Query 38952 AATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAAT 39011 | |||||| || |||||||||| |||||| ||| | | | | ||||| || ||||| Sbjct 19289 AGTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGTTCATTCC-AATAAG 19347 Query 39012 TTAAATGGTAA-TGCATCATCAATAAATTCtttttctatttctacagcttgtttaattat 39070 | || | || || ||| || ||| | | |||||| || ||||||| | || || Sbjct 19348 ATCAACAGGAAGTGAGTCACAAAGAAAGTTTCTTTCTACATCAACAGCTTCTGAGATAAT 19407 Query 39071 cataattatattatttt--ttgataatttatatttaatatgattcgcatataGTAAACAT 39128 | || || | | ||| || ||||||||||| | | || | |||| ||| || Sbjct 19408 --TTGTTGTACTCTAGAAGTTGGTAGTTTATATTTAAGA-GCTTTGTATAT--TAAGCAA 19462 Query 39129 GCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCT 39188 ||||| || | |||||| ||||| || | |||| ||||||| || || | ||| Sbjct 19463 GCAAAGTCAGCATGTAATCCTTCATCACGGCTAATAAGTTCATTAGAGAATGTAAGTCCA 19522 Query 39189 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATA 39248 ||||| | ||| | |||||||||||||||||| | ||| |||| |||||| | || Sbjct 19523 GGCATAAGTCCACGCTTTTTAAGCCAAAATATAGCACAAAAGCTACCAGAAAAAAGAATT 19582 Query 39249 CCCTCCACA-CACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAAT 39307 || || ||| ||| ||| | || ||||| | |||| || | |||| || Sbjct 19583 CCTTCTACAGCAC-AGAATCCAATAATTCTCTCAGCAAA---AGATCTTTCATTATTCAT 19638 Query 39308 CCAATTTATGGCCCAATCTGCttttttttt 39337 ||| || | ||||| |||||||| ||||| Sbjct 19639 CCATTTAGTTGCCCATTCTGCTTTCTTTTT 19668 Score = 87.8 bits (96), Expect = 3e-12 Identities = 162/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 39441 TCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGA-ATACTGAACTTCGGAAAA 39499 || ||||| |||||||||| |||| | |||||||||| ||| || | ||| | Sbjct 19772 TCAATAGCCATTTGAAATGCATAATACATTCTTGCTTCTGGGATA-TGTATTTCTCTTAG 19830 Query 39500 GAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAATGCTAAAAC 39559 ||| || | || || || |||||||||||| || || ||||| |||| || Sbjct 19831 GAAATTGACAGCCAAGTTTTCCATAACAATACCATCACTAGCAGCAAAGAAAGCTAGGAC 19890 Query 39560 ATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAGATCGTTTGA 39619 ||||||||||||||| | ||| ||||| | | |||||||| | | ||| |||| Sbjct 19891 GTATTTAATAAAATGTCTCTCAGGGTCTTTAAGACTTTCCCAATCTCTAGTATC--TTGA 19948 Query 39620 --TAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTTTATACAT 39670 ||| || | ||||| | |||||| |||||| | | |||||||||||| Sbjct 19949 CTTAAGTCAATCTCTTCAGTAACCCAAAACGATGCTTCTGCTTTTTTATACAT 20001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905132877280800