Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq97 147 6e-30 seq44 118 3e-21 seq3 89.7 2e-12 >seq97 Length=14183 Score = 147 bits (162), Expect = 6e-30 Identities = 674/1049 (64%), Gaps = 40/1049 (4%) Strand=Plus/Minus Query 155489 ATCAATAATGTTATTTAAATTTGTAACCAATACCT-TGGTTACGTCTGCTAATTTCACAT 155547 ||||| ||| || |||||||| | |||| || | || || || ||| || || Sbjct 8946 ATCAACAATTTTGTTTAAATTCCTCGT-AATAACTCTCGTAACTTCCTTTAACTTATCAA 8888 Query 155548 AGTCAAATGTTTTATCCTCATTT---ACAAACATACCAAGACCAATAGACGCCAGATTAC 155604 |||| |||||||| | || || |||||| | ||||||||| |||||||| |||| Sbjct 8887 AGTCGAATGTTTTGTTATCTTTGTCAACAAACTTCGGAAGACCAATGGACGCCAGGTTAC 8828 Query 155605 ATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCACAGGTTA--GAACT 155662 | || ||| | || || || |||| |||| ||| || ||| | ||| | | Sbjct 8827 AAACAGCAATTTCATTTGCGCTAGTGTACTCTATAATTTCGGTGCATAAATTACTGGAAA 8768 Query 155663 CTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAAT 155722 | || || || ||||| ||||||||| ||||| || ||| |||||||| || Sbjct 8767 CA--ATAGTCCCCAAATTTTTCTGGTTACTCTTACTATTCGCAGCGTCCTTGTAGCAGAT 8710 Query 155723 GTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATT 155782 | | || |||||||| || || || || | || || | ||| || | | || || Sbjct 8709 GAAAGGCGTTCCTGTTTCAATTTGAGCTTGTAGGATTAAAAACCAAAGTTTCTGCGCCTT 8650 Query 155783 AATT-TGCTTGTT----GTATCTGCCTTCCG-ACTCATATTTCATATACAGCGTTCGGTA 155836 || | || || | |||| || || |||| |||||||| ||| || Sbjct 8649 CATAGTTTTTCTTCCGCGGCCCTGCTTTTCGTACTC----TTCATATA----GTTTCTTA 8598 Query 155837 A--TCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAA 155894 | || ||||| || ||| || || ||| | ||| || || | || | |||| Sbjct 8597 AACTCATCACCCCAAACATCTTGCAACCCCCTGCATTCATCCGGACACATAAGAGTCCAA 8538 Query 155895 ATTT--TATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAA 155952 || | || | | || | ||||||||||| |||| |||||| ||| || | Sbjct 8537 TCTTGGTCTTTCTCA--ACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGAAAGA 8480 Query 155953 GGTCCCTTGCCTTTGA-CTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCA 156011 |||| | || | | | |||||| | || |||||||| | || || | || ||| || Sbjct 8479 GGTCAC-GGCATCTCATCTCCTCTTTTCCATGATTCTTTCTTATTTCAATAAACTCCACA 8421 Query 156012 ATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCC---TCTTGCCACCC 156068 | ||| ||| ||||||| ||| || |||| ||| || | || ||||| Sbjct 8420 ACATCTACATGCCACGGCTCCAAATAAATTGCAATCGCACCCTTGCGTTTCCCTCCACCT 8361 Query 156069 TGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAA 156128 || || | ||| | |||||| | ||| | || | || ||| ||||| | ||||| || Sbjct 8360 TGGTCAATATATCTAGCAGTATCATTATAAACGCGTAACATTGGAATCAGTCCATTAGAC 8301 Query 156129 GTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCA 156188 | |||||||| || ||||||| ||| || | | | || |||| | | |||| Sbjct 8300 CTTCCATTGGTACCCCGAATATACGAGCCCGTTCCTCTAATATTACTCACTGCCACTCCA 8241 Query 156189 ATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCA 156248 | ||| || | ||| ||| | || |||| ||| || | |||||||| || Sbjct 8240 AGACCGCCGGCAGTCTTACTAATATTTGCACATTTTGTTAGCGTGTCAAAAATACCATCT 8181 Query 156249 ATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCA 156308 |||||||| ||| ||| |||| | | || || | |||||||| ||| || || Sbjct 8180 ATAGAATCCTCTGGTATTCTGAGTAAAAAACAAGATGACATTTGAGGTCTTGGAGTGCCG 8121 Query 156309 GCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAA-TCGTATGT 156367 | |||||| || |||||||| ||||| |||||||||| | || | |||| | ||||| Sbjct 8120 GAGTTGAAAAGCGTAGGTGTAGCATGGGTAAAATACTTTTGCGATA-ATAATTTATATGT 8062 Query 156368 CTC--CTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATA 156425 || | | | ||| | || | | || |||| ||| || ||||| | | Sbjct 8061 TTCGAGTGCAGC--CTCGATATCACCGCAATGTATACCACAAGAAACTCTCATTAGAAGA 8004 Query 156426 TGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTT 156485 || || || | |||||||||| |||||||| ||||| || | | ||| | |||| Sbjct 8003 TGTTGTGGTCTCTCTACAATCTTGTTATCAATTCTGAGAAGATAGGACCTTTCTAAAGTT 7944 Query 156486 TTAAACCCGAAATAATCAAACAGAAAATC 156514 || || | ||||||||| | |||||| Sbjct 7943 TTGAATGCAAAATAATCATATTCAAAATC 7915 >seq44 Length=59061 Score = 118 bits (130), Expect = 3e-21 Identities = 345/524 (66%), Gaps = 23/524 (4%) Strand=Plus/Plus Query 288848 TCCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTG 288907 ||| |||||| || || | | |||||||| || ||||| | ||| | | || ||| Sbjct 29617 TCCGATCAAATCTTCCTGGCCTTGTTAATGCAGGATCTAAAACATCAGAACGATTAGTTC 29676 Query 288908 CTGCCAATACAACAA-TAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGA 288966 |||| || || | | | ||| ||| | | || |||||||| | ||| ||| Sbjct 29677 CTGCTAAAACTATTACTCCATTAT-TTTCCGTGAAGCCATCCATTTCAACAAGAATCTGA 29735 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCG--CTCCttt 289024 ||||| || |||||| |||||||| || |||| || | |||| ||||||| Sbjct 29736 TTAAGAGTACTTTCCCTCTCATCATTAGA------TGAAGCAGCA-AATCCACCTCCTTT 29788 Query 289025 --------ttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTG 289076 || | ||||| ||||||||||| ||||| |||| | || ||||| | Sbjct 29789 AGCACGTTTTCTCCCAACTGCATCAATTTCATCAATAAAAACAATACTTGGAGATAACTT 29848 Query 289077 TCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTAC 289136 ||| || || ||||| ||||||||| | ||||| | |||||| | || || | Sbjct 29849 TCTTGCTTGTGAAAATAGTTCTCTTACTCTACTGGCTCCCATTCCAACAAAAATCTCAAT 29908 Query 289137 AAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGC 289196 ||| ||| | || | | || || | |||||| ||||| || || || ||| | || Sbjct 29909 AAAATCACTTCCAGAAATATAAAAAAAAGGTACATTAGCTTCACCAGCAACAGCCTTTGC 29968 Query 289197 CAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC 289256 || | ||| || || || || |||||||| | | |||| | || ||||||| |||||| Sbjct 29969 TAGTAATGTTTTGCCGGTACCTGGTGGTCCTACCAGTAGAGCACCTTTTGGTATTTTTGC 30028 Query 289257 CCCAGCAGA-CTTATATTTCTCAGGGCTC-TTTAAAAATTCTACAATTTCCTCAAGTTCA 289314 ||| ||| ||| | || | ||| || ||||| ||||| || | ||| | | ||| Sbjct 30029 ACCA--AGATCTTGAAATTTTTTGGGATCTTTTAAGAATTCCACCAATTCATATATTTCT 30086 Query 289315 TATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAATATT 289358 | ||| || || | ||| || | |||| ||| ||| ||| Sbjct 30087 TGTTTGGCTTCTTTCATTCCAGCAATATCACTAAATTTAACATT 30130 >seq3 Length=57099 Score = 89.7 bits (98), Expect = 2e-12 Identities = 251/382 (66%), Gaps = 10/382 (3%) Strand=Plus/Minus Query 59990 CCAGTACCAATACCCTTTGTTCCATTGATAAGAATCATCGGGATAATTGGGATATAATAA 60049 || || || ||||| | || ||||| | |||||||| || || ||||| | |||||| Sbjct 33194 CCTGTTCCTATACCATCAGTACCATTAACTAGAATCATTGGAATGATTGGAACATAATAC 33135 Query 60050 ACTGGCTCAACACTATCACCATCATCTTTTAAGTATGTTAAAACCTTGTCGTCAATTTCG 60109 | ||||||| | |||||||| | |||||| ||||| | || ||| ||| Sbjct 33134 AAAGGCTCAATCTGTTGTCCATCATCATATAAGTAAGTTAATAAAGGATCATCAGCTTCT 33075 Query 60110 GGAAATATAGCCCGAGTAATCTTGGATAATTGTGTGAAAATATACCTCTCGGATGCTGCG 60169 ||||||||| | ||| || |||| || || || ||||| | | | ||| Sbjct 33074 GGAAATATATATCTAGTCCATTTAGATAGTTTAGTAAATATATAACGAGCAGCACTTGCA 33015 Query 60170 TCCTTGCCACC---CATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATTAATG 60226 ||||| ||||| | | || | |||||||| || ||| | |||| ||| | Sbjct 33014 TCCTTTCCACCTTCCTTTCTAC---TACCAAATTGACCACATGGTTCTAATAAATTTAGA 32958 Query 60227 TTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTG--GCTT 60284 || || || || || |||||||| | | || |||| || ||| | || | || Sbjct 32957 TTATTGCTTCCAACAAAGTTTTGAGCCATATTTACTATAGTAC--TTTGTAGTGAAGATT 32900 Query 60285 CACCGTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAATTT 60344 | ||||||||||| || |||||| | |||||| ||| |||||| | || |||| || Sbjct 32899 CTCCGTGATGATAAGCACTATGTTCAGCAACATAACCAGCTAATTGTACAACCTTAAGTT 32840 Query 60345 CGGAGTGGAGTTTTTTCTTGAA 60366 | | ||||| ||||| || Sbjct 32839 CATTATTAAGTTTCTTCTTAAA 32818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471812395285012