Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq69 134 1e-26 seq124 122 8e-23 >seq69 Length=29286 Score = 134 bits (148), Expect = 1e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | ||||| |||| || || || || || | ||||| ||| | | Sbjct 9221 GATGCAGATTTTTGTAAAAACTTTAACTGGGAAGACCATCACATTGGAAGTTGAACCTTC 9162 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | |||||| |||||| |||||||||||||| || || || ||||| Sbjct 9161 AGACACTATTGAGAATGTAAAAGCAAAGATTCAAGACAAAGAAGGTATCCCACCTGATCA 9102 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| ||| |||||||||| || ||||| |||| || || | | || ||||| || Sbjct 9101 ACAGCGTCTGATCTTTGCTGGAAAACAATTGGAAGACGGTAGGACTCTATCTGATTACAA 9042 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 ||||||||||| || || | |||||||| ||| || Sbjct 9041 TATTCAAAAGGAGTCTACTTTGCACTTGGTATTGAGA 9005 >seq124 Length=102498 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| |||| || | || || || || || || | ||||| ||| | | Sbjct 26318 ATGCAGATTTTTGTTAAGACTTTGACAGGGAAGACAATCACTTTGGAAGTTGAACCATCG 26377 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| ||||| |||||| || || || |||||||| || || |||||| Sbjct 26378 GACACAATTGAAAATGTAAAGGCAAAGATTCAGGATAAGGAAGGAATTCCACCTGATCAA 26437 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||| |||||||| ||||| || | |||||| |||| | || ||||| || Sbjct 26438 CAGCGTTTAATCTTTGCAGGGAAGCAATTAGAGGATGGAAGAACTCTCTCTGATTACAAT 26497 Query 24884 ATTCAAAAGGAATCGAC 24900 ||||||||||| || || Sbjct 26498 ATTCAAAAGGAGTCCAC 26514 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| | || || || || || || | ||||| ||| | | Sbjct 26774 ATGCAGATTTTTGTCAAAACATTGACAGGAAAGACAATCACTTTAGAAGTTGAACCATCG 26833 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || |||| ||| |||| ||| ||||| || || ||||| || || ||||| Sbjct 26834 GACACAATTGAGAACGTTAAGGCAAA-GATTCAAGATAAGGAGGGAATTCCACCTGATCA 26892 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||||| ||||| || ||||| || | || ||| |||| | || ||||| || Sbjct 26893 ACAACGTTTAATCTTCGCAGGGAAGCAATTAGAAGATGGAAGAACTCTTTCTGATTACAA 26952 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 || ||||| || || || |||| ||||| ||| || Sbjct 26953 TATCCAAAAAGAGTCCACTTTACATTTGGTATTGAGA 26989 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| | || || || || || || | || || ||| | | Sbjct 26546 ATGCAGATTTTTGTCAAAACATTGACGGGAAAGACAATCACTTTAGAGGTTGAACCATCG 26605 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| ||||| |||||| ||||| || || ||||| || || |||||| Sbjct 26606 GACACAATTGAAAATGTAAAGGCAAAGATTCAAGATAAGGAGGGAATTCCACCTGATCAA 26665 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||| ||||| || ||||| || | || ||| |||| | || ||||| || Sbjct 26666 CAACGTTTAATCTTCGCGGGGAAGCAATTAGAAGATGGAAGAACTCTTTCTGATTACAAT 26725 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTT 24915 || ||||| || || || |||| || || || Sbjct 26726 ATCCAAAAAGAGTCCACTTTACATTTAGTCTT 26757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449896047853280