Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq69 122 9e-23 seq124 91.5 1e-13 >seq69 Length=29286 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| || | ||| || || || | ||||| || ||||| || |||||||| Sbjct 8994 CCACCTCTTAGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGAT 9053 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || |||||| | |||||| |||||| |||||||||| || ||||| || || Sbjct 9054 AGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGGG 9113 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| ||| ||| ||||| | || | ||||||| ||||| ||| Sbjct 9114 ATACCTTCTTTGTCTTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAACT 9173 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||||| || || || |||||||| || || ||||| Sbjct 9174 TCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCAT 9220 >seq124 Length=102498 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 137200 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCT 137259 || |||||||| | || || |||||||| || |||||||| | || || ||| Sbjct 26757 AAGACTAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTTCTTCCATCT 26698 Query 137260 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 137319 || | ||| || || || |||| | |||||| ||||| || || || || || || || Sbjct 26697 TCTAATTGCTTCCCCGCGAAGATTAAACGTTGTTGATCAGGTGGAATTCCCTCCTTATCT 26638 Query 137320 GTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTC 137379 ||| ||| |||| | ||| | ||||| | ||||| || || | ||| | ||| Sbjct 26637 TGAATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACCTCTAAAGTGATTGTC 26578 Query 137380 TTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || || ||||||||||| || || || |||||| Sbjct 26577 TTTCCCGTCAATGTTTTGACAAAAATCTGCATA 26545 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 137258 ||| || ||||| | || || |||||||| || |||||||| | || || || Sbjct 26986 CAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTTCTTCCATC 26927 Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 ||| | ||| || || || |||| | |||||| ||||| || || || || || || || Sbjct 26926 TTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGGAATTCCCTCCTTATC 26867 Query 137319 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGT 137378 ||| ||| || | | || | ||||| | ||||| ||||| | ||| | || Sbjct 26866 TTGAATCTTTGCCTTAACGTTCTCAATTGTGTCCGATGGTTCAACTTCTAAAGTGATTGT 26807 Query 137379 CTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||| || ||||||||||| || || || |||||| Sbjct 26806 CTTTCCTGTCAATGTTTTGACAAAAATCTGCATA 26773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488542314523200