Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq124 214 4e-50 seq69 214 4e-50 seq21 84.2 4e-11 >seq124 Length=102498 Score = 214 bits (236), Expect = 4e-50 Identities = 180/221 (81%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 ||||| |||| ||| || || || || ||||| |||||||| ||| |||| || || ||| Sbjct 26526 ACTAAATGCAAAGTGGACTCCTTTTGAATATTGTAATCAGAGAGAGTTCTTCCATCCTCT 26467 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | ||| || || |||||||||| | |||||||| || || |||||||||||||| ||| Sbjct 26466 AATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGTGGAATTCCTTCCTTATCCTGA 26407 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 |||||||| |||||||||||||| || || ||||| ||||||||||| || ||||| Sbjct 26406 ATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACTTCCAAAGTGATTGTCTTC 26347 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCATTATTATATTTTT 82822 |||||||| ||||| ||||| |||||||| ||| ||||||| Sbjct 26346 CCTGTCAAAGTCTTAACAAAAATCTGCATAATTGTATTTTT 26306 Score = 188 bits (208), Expect = 1e-42 Identities = 167/209 (80%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 ||||| || | ||| || ||||| || ||||| |||||||| ||| |||| || |||||| Sbjct 26754 ACTAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTTCTTCCATCTTCT 26695 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | ||| || || || ||||||| | ||||||||| || || ||||| |||||||||||| Sbjct 26694 AATTGCTTCCCCGCGAAGATTAAACGTTGTTGATCAGGTGGAATTCCCTCCTTATCTTGA 26635 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 |||||||| |||||||||||||| || || ||||| || || ||||| || ||||| Sbjct 26634 ATCTTTGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACCTCTAAAGTGATTGTCTTT 26575 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || || ||||| |||||||| Sbjct 26574 CCCGTCAATGTTTTGACAAAAATCTGCAT 26546 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | | || || || || | ||| || ||||| || ||||| |||||||| Sbjct 27000 CCACCTCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGAA 26941 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| |||| || ||||||| ||| || || || ||||||| | ||||||||| || || Sbjct 26940 AGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGGA 26881 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| |||||||||||||||||||| || || || ||||| || || ||||| ||| Sbjct 26880 ATTCCCTCCTTATCTTGAATCTTTGCCTTAACGTTCTCAATTGTGTCCGATGGTTCAACT 26821 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || ||||| |||||||| || || ||||| |||||||| Sbjct 26820 TCTAAAGTGATTGTCTTTCCTGTCAATGTTTTGACAAAAATCTGCAT 26774 >seq69 Length=29286 Score = 214 bits (236), Expect = 4e-50 Identities = 184/228 (81%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| ||||| | | || || ||||||| |||||| || || || ||||| |||||||| Sbjct 8993 ACCACCTCTTAGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGAATATTGTAATCAGA 9052 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 |||| | ||||||||||| | |||||||||||||||||| || | |||||||| || || Sbjct 9053 TAGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGG 9112 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| || ||||||||||||||||||||||| ||||| || || |||||| || Sbjct 9113 GATACCTTCTTTGTCTTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAAC 9172 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || || ||||| || || || || |||||||| |||||||| Sbjct 9173 TTCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCAT 9220 >seq21 Length=87983 Score = 84.2 bits (92), Expect = 4e-11 Identities = 122/171 (71%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 144101 TATAGTAAGAGCCTGGGATATAAATAAACCTCTTATTTTTTGCCCCGCTATGAATACCCT 144160 ||| | |||||| |||||| | || || ||| | || |||| || || ||||| | | Sbjct 70647 TATTGCAAGAGCTTGGGATTTCAACAAGCCTATCATAGTTTGTCCTGCAATGAACAATTT 70706 Query 144161 TATGTGGGAACATCCTATTACAGAAAAACATATAGATACTTTAAAACATATGGGTTTCAT 144220 ||||||||||||||| ||||| || ||| ||||| ||| ||||| | | |||| | Sbjct 70707 TATGTGGGAACATCCGATTACTTTAAGACAAATAGACACTCTAAAATCTTTTGGTTATAA 70766 Query 144221 AGAAATAGAATGTATAGaaaaaaaaCTAGCCTGTGGAGACGTAGGAAATGG 144271 || |||| ||||| || ||| | || ||||| || ||| | ||||| Sbjct 70767 AGTAATATTTCCAATAGAGAAGAAATTGGCATGTGGCGA-GTATGGAATGG 70816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981823728013564