Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq69 93.3 8e-14 seq124 87.8 3e-12 >seq69 Length=29286 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/138 (74%), Gaps = 11/138 (8%) Strand=Plus/Plus Query 81643 CAGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------ 81696 || |||| | ||||| || ||||| |||||||||||||| |||| |||||| || Sbjct 9020 CAAAGTAGACTCCTTTTGAATATTGTAATCAGATAGAGTCCTACCGTCTTCCAATTGTTT 9079 Query 81697 -----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGC 81751 ||||||| || | |||||| | || | || |||| || |||||||||||||| Sbjct 9080 TCCAGCAAAGATCAGACGCTGTTGATCAGGTGGGATACCTTCTTTGTCTTGAATCTTTGC 9139 Query 81752 TTTTATATTTTCAATCGT 81769 ||||| ||| ||||| || Sbjct 9140 TTTTACATTCTCAATAGT 9157 >seq124 Length=102498 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/128 (74%), Gaps = 11/128 (9%) Strand=Plus/Minus Query 81653 TCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAAAG 81701 ||||| || ||||| |||||||| |||||||| | || ||||| ||||| Sbjct 26508 TCCTTTTGAATATTGTAATCAGAGAGAGTTCTTCCATCCTCTAATTGCTTCCCTGCAAAG 26449 Query 81702 ATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATATTT 81761 |||| | |||||| | || | ||| |||||||||| ||||||||||| |||| |||| Sbjct 26448 ATTAAACGCTGTTGATCAGGTGGAATTCCTTCCTTATCCTGAATCTTTGCCTTTACATTT 26389 Query 81762 TCAATCGT 81769 ||||| || Sbjct 26388 TCAATTGT 26381 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/128 (74%), Gaps = 11/128 (9%) Strand=Plus/Minus Query 81653 TCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAAAG 81701 || || || ||||| |||||||| |||||||| | |||||||| | ||| Sbjct 26736 TCTTTTTGGATATTGTAATCAGAAAGAGTTCTTCCATCTTCTAATTGCTTCCCCGCGAAG 26677 Query 81702 ATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATATTT 81761 |||| | ||||||| | || | ||| | |||||||||||||||||||| |||| |||| Sbjct 26676 ATTAAACGTTGTTGATCAGGTGGAATTCCCTCCTTATCTTGAATCTTTGCCTTTACATTT 26617 Query 81762 TCAATCGT 81769 ||||| || Sbjct 26616 TCAATTGT 26609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903408083231360