Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq124 134 3e-26 seq69 113 1e-19 >seq124 Length=102498 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| | |||||||| || |||||||| ||||| ||| || ||| Sbjct 26777 CAGATTTTTGTCAAAACATTGACAGGAAAGACAATCACTTTAGAAGTTGAACCATCGGAC 26836 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| |||||||||||| || || |||||| || || ||| Sbjct 26837 ACAATTGAGAACGTTAAGGCAAAGATTCAAGATAAGGAGGGAATTCCACCTGATCAACAA 26896 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | |||||||| || ||||| || ||||||||||| ||| | | |||||||| || Sbjct 26897 CGTTTAATCTTCGCAGGGAAGCAATTAGAAGATGGAAGAACTCTTTCTGATTACAATATC 26956 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || |||||||| ||| | || | || ||||||||| || Sbjct 26957 CAAAAAGAGTCCACTTTACATTTGGTATTGAGACTTAGA 26995 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| | || ||||| || |||||||| || || ||| || ||| Sbjct 26549 CAGATTTTTGTCAAAACATTGACGGGAAAGACAATCACTTTAGAGGTTGAACCATCGGAC 26608 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | ||| |||||| |||||||||||| || || |||||| || || ||| Sbjct 26609 ACAATTGAAAATGTAAAGGCAAAGATTCAAGATAAGGAGGGAATTCCACCTGATCAACAA 26668 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | |||||||| || ||||| || ||||||||||| ||| | | |||||||| || Sbjct 26669 CGTTTAATCTTCGCGGGGAAGCAATTAGAAGATGGAAGAACTCTTTCTGATTACAATATC 26728 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 || |||||||| ||| | || | || || ||||| Sbjct 26729 CAAAAAGAGTCCACTTTACATTTAGTCTTAAGACT 26763 Score = 105 bits (116), Expect = 2e-17 Identities = 156/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | ||||| || || |||||||||||||| ||| || ||| Sbjct 26321 CAGATTTTTGTTAAGACTTTGACAGGGAAGACAATCACTTTGGAAGTTGAACCATCGGAC 26380 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | ||| |||||| ||||||||| || || ||||||||| || || |||| Sbjct 26381 ACAATTGAAAATGTAAAGGCAAAGATTCAGGATAAGGAAGGAATTCCACCTGA---TCAA 26437 Query 206293 -AGACTT--ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 || || ||||| || || ||||| || || |||||||| ||| | | |||||||| Sbjct 26438 CAGCGTTTAATCTTTGCAGGGAAGCAATTAGAGGATGGAAGAACTCTCTCTGATTACAAT 26497 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 | || || ||||| ||| | || | || || ||||| Sbjct 26498 ATTCAAAAGGAGTCCACTTTGCATTTAGTCTTAAGACT 26535 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 || ||||||||| || | || | ||| |||||||| |||| ||| || |||| | ||| Sbjct 26995 TCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGT 26936 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||||| | ||||| || |||||||| | ||||||||| Sbjct 26935 TCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGA 26890 >seq69 Length=29286 Score = 113 bits (124), Expect = 1e-19 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | || || || || ||||| |||||||| ||| ||| ||| Sbjct 9217 CAGATTTTTGTAAAAACTTTAACTGGGAAGACCATCACATTGGAAGTTGAACCTTCAGAC 9158 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || ||||| |||||||||||| |||||||| || || || || Sbjct 9157 ACTATTGAGAATGTAAAAGCAAAGATTCAAGACAAAGAAGGTATCCCACCTGATCAACAG 9098 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || ||||| || |||||||| || |||||| | | |||||||| | Sbjct 9097 CGTCTGATCTTTGCTGGAAAACAATTGGAAGACGGTAGGACTCTATCTGATTACAATATT 9038 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 || || ||||||||| | ||| | || |||||||| Sbjct 9037 CAAAAGGAGTCTACTTTGCACTTGGTATTGAGACT 9003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181816620786196