Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq124 111 1e-19 seq69 104 2e-17 >seq124 Length=102498 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| |||||||| || ||||| | ||||| | || || ||| ||| | Sbjct 26546 ATGCAGATTTTTGTCAAAACATTGACGGGAAAGACAATCACTTTAGAGGTTGAA-CCATC 26604 Query 25235 G-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 | | || || || | ||||| ||| ||| ||||| ||||| || || || ||||| Sbjct 26605 GGACACAATTGAAAATGTAAAGGCAAAGATTCAAGATAAGGAGGGAATTCCACCTGATCA 26664 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | | || | || || || ||| | ||||||| |||| | | |||||||| Sbjct 26665 ACAACGTTTAATCTTCGCGGGGAAGCAATTAGAAGATGGAAGAACTCTTTCTGATTACAA 26724 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| |||||||| ||||| | |||||||| |||||| | ||||| || Sbjct 26725 TATCCAAAAAGAGTCCACTTTACATTTAGTCTTAAGACTCAGAGGTGG 26772 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| |||||||| || ||||| | ||||| | ||||| ||| ||| | Sbjct 26774 ATGCAGATTTTTGTCAAAACATTGACAGGAAAGACAATCACTTTAGAAGTTGAA-CCATC 26832 Query 25235 G-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 | | || || ||| | || || ||| ||| ||||| ||||| || || || ||||| Sbjct 26833 GGACACAATTGAGAACGTTAAGGCAAAGATTCAAGATAAGGAGGGAATTCCACCTGATCA 26892 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | | || | || || || ||| | ||||||| |||| | | |||||||| Sbjct 26893 ACAACGTTTAATCTTCGCAGGGAAGCAATTAGAAGATGGAAGAACTCTTTCTGATTACAA 26952 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||| |||||||| ||||| | ||||| || || ||| | ||||| |||| Sbjct 26953 TATCCAAAAAGAGTCCACTTTACATTTGGTATTGAGACTTAGAGGTGGAA 27002 Score = 89.7 bits (98), Expect = 5e-13 Identities = 176/255 (69%), Gaps = 4/255 (2%) Strand=Plus/Plus Query 25150 TATAAGTAGTTTTCAATTAA-ACAAC-ATGCAAGTGTTTGTAAAAACATTAACCGGAAAA 25207 |||| | | | ||||| || |||| ||||| | ||||| || || || || || || Sbjct 26291 TATAGGGATTGTTCAAAAAATACAATTATGCAGATTTTTGTTAAGACTTTGACAGGGAAG 26350 Query 25208 TCGATCACGATCGAAGTCGAAGCCAACG-ATACTATCGAGCAAGTAAAACAAAAAATTAC 25266 | ||||| | ||||| ||| ||| || | || || || | ||||| ||| ||| Sbjct 26351 ACAATCACTTTGGAAGTTGAA-CCATCGGACACAATTGAAAATGTAAAGGCAAAGATTCA 26409 Query 25267 CGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGA 25326 ||||| || || || || || ||||| || | | || | | || || ||| | || Sbjct 26410 GGATAAGGAAGGAATTCCACCTGATCAACAGCGTTTAATCTTTGCAGGGAAGCAATTAGA 26469 Query 25327 AGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||| |||| | || ||||||||||||||||| || ||||| | |||||||| || Sbjct 26470 GGATGGAAGAACTCTCTCTGATTACAATATTCAAAAGGAGTCCACTTTGCATTTAGTCTT 26529 Query 25387 AAGATTGAGAGGAGG 25401 |||| | ||||| || Sbjct 26530 AAGACTCAGAGGTGG 26544 >seq69 Length=29286 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || ||||| | ||||||||||| ||||| || || | ||||| | ||||| ||| | Sbjct 9223 AAGATGCAGATTTTTGTAAAAACTTTAACTGGGAAGACCATCACATTGGAAGTTGAACCT 9164 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 || ||||| ||| | |||||| ||| ||| || ||||| ||||| || || ||| Sbjct 9163 TCAGACACTATTGAGAATGTAAAAGCAAAGATTCAAGACAAAGAAGGTATCCCACCTGAT 9104 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 || || | || || | | || |||||| | ||||| | ||| | | | |||||| Sbjct 9103 CAACAGCGTCTGATCTTTGCTGGAAAACAATTGGAAGACGGTAGGACTCTATCTGATTAC 9044 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||||||| || || || | || || || || ||| | ||||| || Sbjct 9043 AATATTCAAAAGGAGTCTACTTTGCACTTGGTATTGAGACTAAGAGGTGG 8994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445092864424320