Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq97 235 8e-57 seq45 230 3e-55 >seq97 Length=14183 Score = 235 bits (260), Expect = 8e-57 Identities = 968/1518 (64%), Gaps = 19/1518 (1%) Strand=Plus/Minus Query 68703 ATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGT 68762 ||| ||||| |||| |||||| ||||| | || |||||| || ||||| || Sbjct 9423 ATGAGGATTCACTACAAAAAATTCACCAGAAAGTACCCTACGATGATATATATTTGAAGT 9364 Query 68763 ATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGG 68822 | ||||||| | | ||| || || || | ||||| | || || ||||| ||||| || Sbjct 9363 AAATGGTTCAAAACTTTCGTTGTTACCTAATATTTGCGAGGTAGACGCAGTAGGCATTGG 9304 Query 68823 TGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCA 68882 || | | | ||| | || |||| | || | ||||| || | ||| Sbjct 9303 AGCAATTAGAAGTGAATTACGGAGCCCATACTTAGAAATCCTTTCTTTAAGTGAATCCCA 9244 Query 68883 ATCCCAAAGATCAGAT---GGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACT 68939 || ||||| |||| || ||| ||| | || |||||||||| || ||||| Sbjct 9243 GTCGCAAAGCCCAGAATCAGGCTTAACTCCCCACATGTCAAATTGTAGAATACCTTTACT 9184 Query 68940 TGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGC 68999 || ||| ||| ||| |||||||| || || || | ||| || || || ||||| || Sbjct 9183 CGCGGGTGACCCAGAATACGTTTCATACGGCCCATCTTTTTCTGCGAGCTCGCAACTAGC 9124 Query 69000 CTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCTA 69058 ||| | || | |||||||| ||| ||||||| |||||| | | | | ||||| Sbjct 9123 CTCGAGCGCCGCATAATAAATAACTTCAAAAATCTCCTTATTTAATTTCCTAGCCTTCTC 9064 Query 69059 GACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATAC 69118 | || |||| | | | | ||||| |||||| | ||| ||||| ||||| | Sbjct 9063 TGAT-TCATATGGCATACGAAGCATCATAAAGCAATCTGCAAGTCCTTGAACACCAATTC 9005 Query 69119 CGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATAT 69178 | | || | |||| | |||||| ||| | |||||| | || |||||| || Sbjct 9004 CAAGCGGGCGATGTTTTAGATTTGAGTTTTTACATTCTGGGAGAGAATAATATCCGTGAT 8945 Query 69179 CTATAATTTTATTAAGATT--TCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAA 69236 | | |||||| || | ||| ||| | || ||| | || ||||||| || ||| Sbjct 8944 CAACAATTTTGTTTAAATTCCTCGTAATA--ACTCTCGTAACTTCCTTTAACTTATCAAA 8887 Query 69237 ATCAAATCGTCC---ATCTAT---AACAAACATATTCAGTGCTACAGATGCTAGATTACA 69290 || ||| | |||| | ||||||| | || | | || || || ||||| Sbjct 8886 GTCGAATGTTTTGTTATCTTTGTCAACAAACTTCGGAAGACCAATGGACGCCAGGTTACA 8827 Query 69291 AACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTT 69350 ||| || | ||||| | | | || | ||| || || || |||| |||||| | Sbjct 8826 AACAGCAATTTCATTTGCGCTAGTGTACTCTATAATTTCGGTGCATAAATTACTGGAAAC 8767 Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAA 69410 |||||||||| ||||| ||| |||||||| | || ||||||||||| || || Sbjct 8766 AATAGTCCCCAAATTTTTCTGGTTACTCTTACTATTCGCAGCGTCCTTGTAGCAGATGAA 8707 Query 69411 CGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT 69470 || || || |||||||| |||| || | || | ||||| | || || || Sbjct 8706 AGGCGTTCCTGTTTCAATTTGAGCTTGTAGGATTAAAAACCAAAGTTTCTGCGCCTTCAT 8647 Query 69471 TACGGTCTTGTAACGCTTCTCT--TTTTCATATTGTGTATATAGCCGTTCGAATTCATCT 69528 | | || | ||| | || ||||| || | | |||||| | || ||||| Sbjct 8646 A--GTTTTTCTTCCGCGGCCCTGCTTTTCGTACTCTTCATATAGTTTCTTAAACTCATCA 8589 Query 69529 CCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCA 69588 ||||||||||| | ||| || ||||||| |||||||| | | ||| | | || Sbjct 8588 CCCCAAACATCTTGCAACCCCCTGCATTCATCCGGACACATAAGAGTCCAATCTTGGTCT 8529 Query 69589 TCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTT 69648 | || ||| | | |||||||||||| |||| |||||| || |||||| || | | | Sbjct 8528 TTCTCAACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGGCAT 8469 Query 69649 CTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGC 69708 || | || || ||||| ||| ||| | | || | |||||||| || ||| |||| Sbjct 8468 CTCATCTCCTCTTTTCCATGATTCTTTCTTATTTCAATAAACTCCACAACATCTACATGC 8409 Query 69709 CATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTAT 69768 || || || | ||| || || || | ||| ||||| ||| || || || || ||| Sbjct 8408 CACGGCTCCAAATAAATTGCAATCGCACCCTTGCGTTTCCCTCCACCTTGGTCAATATAT 8349 Query 69769 CTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTT 69828 || ||||| | |||||| || | | ||| ||||| | |||||||| | ||||| || Sbjct 8348 CTAGCAGTATCATTATAAACGCGTAACATTGGAATCAGTCCATTAGACCTTCCATTGGTA 8289 Query 69829 CCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCC 69888 || |||||| || || | | ||||||||| | | | || | || || || Sbjct 8288 CCCCGAATATACGAGCCCGTTCCTCTAATATTACTCACTGCCACTCCAAGACCGCCGGCA 8229 Query 69889 ATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCT 69948 | ||| || ||||| | | | |||||| | ||||| ||||| ||| ||| Sbjct 8228 GTCTTACTAATATTTGCACATTTTGTTAGCGTGTCAAAAATACCATCTATAGAATCCTCT 8169 Query 69949 ATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAAT 70008 || | || | |||||| ||||||||| | | ||| || | || || | Sbjct 8168 GGTATTCTGAGTAAAAAACAAGATGACATTTGAGGTCTTGGAGTGCCGGAGTTGAAAAGC 8109 Query 70009 GTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGAT 70068 ||||| | || || || || | |||| || | | || |||||||| | || | Sbjct 8108 GTAGGTGTAGCATGGGTAAAATACTTTTGCGATAATAATTTATATGTTTCGAGTGCAGCC 8049 Query 70069 TCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCT 70128 || ||||| | ||| || || | || | ||| | | ||| || |||| ||| Sbjct 8048 TCGATATCACCGCAATGTATACCACAAGAAACTCTCATTAGAAGATGTTGTGGTCTCTCT 7989 Query 70129 ACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAG 70188 || | || |||| ||| | | || || || |||| | |||||| || ||||||| Sbjct 7988 ACAATCTTGTTATCAATTCTGAGAAGATAGGACCTTTCTAAAGTTTTGAATGCAAAATAA 7929 Query 70189 TTGTATGAAAAGTCTCTT 70206 | ||| ||| ||| || Sbjct 7928 TCATATTCAAAATCTTTT 7911 >seq45 Length=29048 Score = 230 bits (254), Expect = 3e-55 Identities = 576/864 (67%), Gaps = 12/864 (1%) Strand=Plus/Plus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 ||||||||| |||| ||||| || || | || || || ||||| ||||| |||| Sbjct 19156 CATAACTCCAGCCATTTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTG 19215 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAA-ATC 39431 | ||| ||| ||||| |||| || ||||||| |||| || |||| | ||| Sbjct 19216 GAGTGAAATAAGATCCATCCAATCGAAGGGATTAGAAACATTGTAAATTTTGGGGATATC 19275 Query 39432 CTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAAT 39491 | | | ||| | |||||| || |||||||| || ||| ||| | | | | | Sbjct 19276 CAGAG-CAAAAAGGAGTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGT 19334 Query 39492 TCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGG 39551 ||||||| || || | ||| || || | || ||||| | | |||| | || || | Sbjct 19335 TCATTCCAATAAGATCAACAGGAAGTGAGTCACAAAGAAAGTTTCTTTCTACATCAACAG 19394 Query 39552 CCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATG---TTTAA 39608 | |||| || || | |||| || | | | ||| | | || | | ||| Sbjct 19395 CTTCTGAGATAATTTGTTGTACT--CT-AGAAGTTGGTAGTTTATATTTAAGAGCTTTGT 19451 Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 | |||||||| || |||||| ||||| || ||||| | ||||| | ||| ||||| | Sbjct 19452 ATATTAAGCAAGCAAAGTCAGCATGTAATCCTTCATCACGGCTAATAAGTTCATTAGAGA 19511 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCA 39727 |||| ||||||||||| || ||||||||||| ||||||||||| ||| |||||| | ||| Sbjct 19512 ATGTAAGTCCAGGCATAAGTCCACGCTTTTTAAGCCAAAATATAGCA-CAAAAGCTACCA 19570 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA 39787 ||||| | || |||||||| || ||| ||| || |||||| | || | | ||| Sbjct 19571 GAAAAAAGAATTCCTTCTACAGCACAGAATCCAATAATTCTCTCAGCAAAAGATCTTTCA 19630 Query 39788 TTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATA 39847 |||| ||||| || |||||| || |||||||| || || || || ||| Sbjct 19631 TTATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATATGAGAAATA 19690 Query 39848 GCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTA 39907 || | ||| || || ||| | | || ||| |||| | || ||||||| | Sbjct 19691 GCCTCAAAAAGCATTTGACGTTCTTTTATTTCAGTAATATATCTGTCAATTAACAAGGAA 19750 Query 39908 TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 39967 || |||| ||| || | ||||| ||||| |||||| | ||| | ||||||||| Sbjct 19751 TATGTTTCATTATGAATTTGCTCAATAGCCATTTGAAATGCATAATACATTCTTGCTTCT 19810 Query 39968 GTAATTTGTACCTCT-GAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACT 40026 | || |||| ||| | |||| | | ||||| ||||| | || || |||||||| Sbjct 19811 GGGATATGTATTTCTCTTAGGAAAT-TGACAGCCAAGTTTTCCATAACAATACCATCACT 19869 Query 40027 AGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT 40086 ||| ||||| || || | || | ||||||||||| | | ||| | | | | | | Sbjct 19870 AGCAGCAAAGAAAGCTAGGACGTATTTAATAAAATGTCTCTCAGGGTCTTTAAGACTTTC 19929 Query 40087 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGC 40146 ||| || | |||||| || || | ||||||| ||||||||| || ||||| Sbjct 19930 CCAATCTCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAACCCAAAACGATGCTTCTGC 19989 Query 40147 CTTTTTGTACATGTTCCATATATC 40170 ||||| ||||| ||| ||||| Sbjct 19990 TTTTTTATACATAAACCAAATATC 20013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686906430164640