Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq124 140 2e-28 seq69 136 3e-27 >seq124 Length=102498 Score = 140 bits (154), Expect = 2e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| | |||||||| || |||||| | || ||||| | || Sbjct 26546 ATGCAGATTTTTGTCAAAACATTGACGGGAAAGACAATCACTTTAGAGGTTGAACCATCG 26605 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| |||| ||| ||| || || || || | || || |||||| Sbjct 26606 GACACAATTGAAAATGTAAAGGCAAAGATTCAAGATAAGGAGGGAATTCCACCTGATCAA 26665 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || |||||||| || || || || ||| | ||||| | | | ||| | |||||||| Sbjct 26666 CAACGTTTAATCTTCGCGGGGAAGCAATTAGAAGATGGAAGAACTCTTTCTGATTACAAT 26725 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || |||||||||||||| ||||||||||| ||||| Sbjct 26726 ATCCAAAAAGAGTCCACTTTACATTTAGTCTTAAG 26760 Score = 136 bits (150), Expect = 3e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||| || | || || || || |||||| | |||||||| | || Sbjct 26318 ATGCAGATTTTTGTTAAGACTTTGACAGGGAAGACAATCACTTTGGAAGTTGAACCATCG 26377 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| |||| ||| ||| || || ||||| | || || |||||| Sbjct 26378 GACACAATTGAAAATGTAAAGGCAAAGATTCAGGATAAGGAAGGAATTCCACCTGATCAA 26437 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||||||||| ||||| || || ||| | || || | | | ||| | |||||||| Sbjct 26438 CAGCGTTTAATCTTTGCAGGGAAGCAATTAGAGGATGGAAGAACTCTCTCTGATTACAAT 26497 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || ||||| |||||||| || |||||||| ||||| Sbjct 26498 ATTCAAAAGGAGTCCACTTTGCATTTAGTCTTAAG 26532 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| | || ||||| || |||||| | |||||||| | || Sbjct 26774 ATGCAGATTTTTGTCAAAACATTGACAGGAAAGACAATCACTTTAGAAGTTGAACCATCG 26833 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || |||| | ||| ||| || || || || | || || ||||| Sbjct 26834 GACACAATTGAGAACGTTAAGGC-AAAGATTCAAGATAAGGAGGGAATTCCACCTGATCA 26892 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| |||||||| || || || || ||| | ||||| | | | ||| | |||||||| Sbjct 26893 ACAACGTTTAATCTTCGCAGGGAAGCAATTAGAAGATGGAAGAACTCTTTCTGATTACAA 26952 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || |||||||||||||| |||||||| || || || | |||| ||| Sbjct 26953 TATCCAAAAAGAGTCCACTTTACATTTGGTATTGAGACTTAGAGGTGGA 27001 >seq69 Length=29286 Score = 136 bits (150), Expect = 3e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || ||||| | || || || || ||||| | |||||||| | Sbjct 9223 AAGATGCAGATTTTTGTAAAAACTTTAACTGGGAAGACCATCACATTGGAAGTTGAACCT 9164 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | |||||| |||| | ||||| ||| ||| |||||||||||| | || || ||| Sbjct 9163 TCAGACACTATTGAGAATGTAAAAGCAAAGATTCAAGACAAAGAAGGTATCCCACCTGAT 9104 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||||||| | || ||||| || |||||| ||||||||| | ||| || |||||| Sbjct 9103 CAACAGCGTCTGATCTTTGCTGGAAAACAATTGGAAGACGGTAGGACTCTATCTGATTAC 9044 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || || ||||| ||||| || || || || || || || Sbjct 9043 AATATTCAAAAGGAGTCTACTTTGCACTTGGTATTGAG 9006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008463020208