Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq45 208 7e-49 seq193 84.2 2e-11 >seq45 Length=29048 Score = 208 bits (230), Expect = 7e-49 Identities = 573/859 (67%), Gaps = 27/859 (3%) Strand=Plus/Plus Query 4258 TTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTT 4317 |||| ||||| |||| |||||| |||||||| ||||| |||| | |||||| | Sbjct 19170 TTTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTGGAGTGAAATAAGAT 19229 Query 4318 CCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCA 4377 |||| |||| || ||||||| | |||||| ||| | ||||| | ||| | Sbjct 19230 CCATCCAATCGAAGGGATTAGAAACATTGTAAATTTTGGGGATATCCAGAGCAAAAAGGA 19289 Query 4378 ATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA-AT 4436 || |||||||||||||| ||||| || ||| ||| |||| |||||||| | || Sbjct 19290 GTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGTTCATTCCAATAAGAT 19349 Query 4437 CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATA 4496 | ||||| || | || | ||| | | ||||| | || ||||||| ||| || Sbjct 19350 CA-ACAGGAAGTGAGTCACAAAGAAAGTTTCTTTCTACATCAACAGCTTCTGAGATAATT 19408 Query 4497 TCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTA-TCCAAACAATAAACACGCAAA 4555 | || || | || | | | |||||| | |||| | | | ||| || ||||| Sbjct 19409 TGTTGTACTCTAGAAGTTGGTAGTTTATATT-TAAGAGCTTTGTATATTAAGCAAGCAAA 19467 Query 4556 ATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCAT 4615 ||| ||| || ||||| || | |||||| ||||| ||||| || || | ||| ||||| Sbjct 19468 GTCAGCATGTAATCCTTCATCACGGCTAATAAGTTCATTAGAGAATGTAAGTCCAGGCAT 19527 Query 4616 TAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTC 4675 | || | ||||||||||||||||||||| ||| |||||||| | || ||||| Sbjct 19528 AAGTCCACGCTTTTTAAGCCAAAATATAGCACAAAAGCTACCAGAAAAAAGAATTCCTTC 19587 Query 4676 TACGGCGGCAAACGCTACTAA-TCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATT 4734 ||| || || | | | ||| || | || || || || | || ||||||| Sbjct 19588 TACAGC-ACAGAATCCAATAATTCTCTCAGCAAAAGATCT---TTCATTATTCATCCATT 19643 Query 4735 TTAATGCCCAGTTAGCTTTTTTCTTAAC-GCACGGAATTGTG-TATATAGCGTTAAATA- 4791 | |||||| | ||||| || ||||| ||| ||| | || | ||||| | ||| | Sbjct 19644 TAGTTGCCCATTCTGCTTTCTTTTTAACTGCA--GAAATATGAGAAATAGCCTCAAAAAG 19701 Query 4792 -ATTT-ACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTC 4849 |||| || || || | | || |||||| |||| |||| | | ||| |||| Sbjct 19702 CATTTGACGTTCTTTTATT---TCAGTAATATATCTGTCAATTAACAAGGAATATGTTTC 19758 Query 4850 AGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTG 4909 | ||| || | || ||||| || |||||| | ||| | ||| ||||||| | || Sbjct 19759 ATTATGAATTTGCTCAATAGCCATTTGAAATGCATAATACATTCTTGCTTCTGGGATATG 19818 Query 4910 AACTTC-GTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAA 4968 | ||| ||| |||| | | | |||||||| | || ||||| ||||| || |||| Sbjct 19819 TATTTCTCTTAGGAAAT-TGACAGCCAAGTTTTCCATAACAATACCATCACTAGCAGCAA 19877 Query 4969 AAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGG---CTTAAGTTTTTTCCAGT 5025 | || || | || | || ||| | ||| ||||| ||||| ||| ||| | Sbjct 19878 AGAAAGCTAGGACGT---ATTTAATAAAATGTCTCTCAGGGTCTTTAAGACTTTCCCAAT 19934 Query 5026 GGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTT 5085 ||||| | |||| |||| |||||| | ||||||||| ||||| ||||||| Sbjct 19935 CTCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAACCCAAAACGATGCTTCTGCTTTTT 19994 Query 5086 TGTACATAGACCAAATATC 5104 | |||||| |||||||||| Sbjct 19995 TATACATAAACCAAATATC 20013 >seq193 Length=106267 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 114546 AACAAAGTTAATAAGACAAGCCAACGAAGGCAGAAAAAGAGGTGGAGGAATTAAGTTTGG 114605 ||||| ||||| |||||| | | ||||| || ||||| || ||| ||| |||||| Sbjct 13856 AACAATGTTAACGAGACAACCAAGAGAAGGAAGGGCAAGAGAAGGTGGACTTAGGTTTGG 13797 Query 114606 AGAAATGGAGCGAGATTGTATAATAGCACACGGTGCCGCAAACACTATTAACGAAATACT 114665 |||||||||||| |||||||| ||| | || ||| | ||||| | | || |||| ||| Sbjct 13796 AGAAATGGAGCGTGATTGTATGATATCTCATGGTTCAGCAAAAATGTTGAAAGAAAGACT 13737 Query 114666 T 114666 | Sbjct 13736 T 13736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427048163511908