Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq97 280 2e-70 seq45 226 4e-54 >seq97 Length=14183 Score = 280 bits (310), Expect = 2e-70 Identities = 980/1518 (65%), Gaps = 19/1518 (1%) Strand=Plus/Minus Query 75706 ATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGT 75765 ||||||||| || | |||||| ||||| | ||| || ||| || ||||| || Sbjct 9423 ATGAGGATTCACTACAAAAAATTCACCAGAAAGTACCCTACGATGATATATATTTGAAGT 9364 Query 75766 ATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGG 75825 | ||||||| | | ||| ||||| || || ||||| | || || ||||| ||||| || Sbjct 9363 AAATGGTTCAAAACTTTCGTTGTTACCTAATATTTGCGAGGTAGACGCAGTAGGCATTGG 9304 Query 75826 TGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCA 75885 || | | | ||| | ||| |||| | || | ||||| || | | ||| Sbjct 9303 AGCAATTAGAAGTGAATTACGGAGCCCATACTTAGAAATCCTTTCTTTAAGTGAATCCCA 9244 Query 75886 ATCCCAAAGATCTGAT---GGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCT 75942 || ||||| | || || ||| |||| | || |||||||||| || || || Sbjct 9243 GTCGCAAAGCCCAGAATCAGGCTTAACTCCCCACATGTCAAATTGTAGAATACCTTTACT 9184 Query 75943 AGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGC 76002 || ||| ||| ||| ||||| || | ||| || ||||| || || |||||||| || Sbjct 9183 CGCGGGTGACCCAGAATACGTTTCATACGGCCCATCTTTTTCTGCGAGCTCGCAACTAGC 9124 Query 76003 CTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT-AAGATCTTGCGCTTCAA 76061 ||| | ||| | |||||||| ||| ||||||| |||||| || || | |||| Sbjct 9123 CTCGAGCGCCGCATAATAAATAACTTCAAAAATCTCCTTATTTAATTTCCTAGCCTTCTC 9064 Query 76062 GACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATAC 76121 | ||| | || | | | | ||||| |||||| ||||| ||||| ||||| | Sbjct 9063 TGAT-TCATATGGCATACGAAGCATCATAAAGCAATCTGCAAGTCCTTGAACACCAATTC 9005 Query 76122 CAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATAT 76181 ||| || | |||| | ||| || ||| | |||||| | || ||||| || Sbjct 9004 CAAGCGGGCGATGTTTTAGATTTGAGTTTTTACATTCTGGGAGAGAATAATATCCGTGAT 8945 Query 76182 CTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAAT 76241 | | |||||| || | ||| || || ||| | || ||||||| || ||| | Sbjct 8944 CAACAATTTTGTTTAAATTCCTCGTAATAACTCTCGTAACTTCCTTTAACTTATCAAAGT 8885 Query 76242 CAAATTTTCC---ATCTATC---ACAAACATATTAAGAGCTATAGATGCTAGATTACAAA 76295 | ||| || |||| | |||||| | |||| | || || || || ||||||| Sbjct 8884 CGAATGTTTTGTTATCTTTGTCAACAAACTTCGGAAGACCAATGGACGCCAGGTTACAAA 8825 Query 76296 CGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGA 76355 | || | ||||| || | | || | ||| || || ||||||| |||||| | | Sbjct 8824 CAGCAATTTCATTTGCGCTAGTGTACTCTATAATTTCGGTGCATAAATTACTGGAAACAA 8765 Query 76356 TAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAA-AGAACAAAC 76414 |||| || | ||||| ||||| ||||| | || | |||||| || ||| ||| Sbjct 8764 TAGTCCCCAAATTTTTCTGGTTACTCTTACTATTCGCAGCGTCCTTGTAGCAGATGAAA- 8706 Query 76415 GGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTA-GCTTTTAT 76473 || ||||| |||||||| || | || | || | ||| | | ||| || || || Sbjct 8705 GGCGTTCCTGTTTCAATTTGAGCTTGTAGGATTAAAAACCAAA-GTTTCTGCGCCTTCAT 8647 Query 76474 TATAGATTTGTATCGCTTCTCTC--TTTCATATTGTGTATATAACCGTTCAAATTCATCT 76531 | ||| | ||| | || |||| || | | ||||| | ||| ||||| Sbjct 8646 AGTT--TTTCTTCCGCGGCCCTGCTTTTCGTACTCTTCATATAGTTTCTTAAACTCATCA 8589 Query 76532 CCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCT 76591 ||||||||||| | ||| || ||||||| ||||||||| | | ||| || ||| Sbjct 8588 CCCCAAACATCTTGCAACCCCCTGCATTCATCCGGACACATAAGAGTCCAATCTTGGTCT 8529 Query 76592 TCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTT 76651 | || ||||| | |||||| |||||||| | ||| || ||| ||| || || ||| | Sbjct 8528 TTCTCAACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGGCAT 8469 Query 76652 CTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGC 76711 || || || ||||| ||||||| | | || | ||||||| || ||| |||| Sbjct 8468 CTCATCTCCTCTTTTCCATGATTCTTTCTTATTTCAATAAACTCCACAACATCTACATGC 8409 Query 76712 CATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATAT 76771 || || || | ||| || || || ||||| ||||| || || || || |||||| Sbjct 8408 CACGGCTCCAAATAAATTGCAATCGCACCCTTGCGTTTCCCTCCACCTTGGTCAATATAT 8349 Query 76772 CTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTT 76831 || ||||| | ||||||||| | ||||||||||| | || ||||| | ||||| || Sbjct 8348 CTAGCAGTATCATTATAAACGCGTAACATTGGAATCAGTCCATTAGACCTTCCATTGGTA 8289 Query 76832 CCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCC 76891 || |||||| || | | | ||||||||| | | | || | || || || Sbjct 8288 CCCCGAATATACGAGCCCGTTCCTCTAATATTACTCACTGCCACTCCAAGACCGCCGGCA 8229 Query 76892 ATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCC 76951 | ||| || ||||| | | | |||||| | || || |||||| ||| || Sbjct 8228 GTCTTACTAATATTTGCACATTTTGTTAGCGTGTCAAAAATACCATCTATAGAATCCTCT 8169 Query 76952 ATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAAT 77011 || | || | |||||| ||||||||| | ||| || | || || | Sbjct 8168 GGTATTCTGAGTAAAAAACAAGATGACATTTGAGGTCTTGGAGTGCCGGAGTTGAAAAGC 8109 Query 77012 GTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCT 77071 ||||| | ||||| || || | |||| || | || || |||||||| | | || Sbjct 8108 GTAGGTGTAGCATGGGTAAAATACTTTTGCGATAATAATTTATATGTTTCGAGTGCAGCC 8049 Query 77072 TCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCT 77131 || ||||| | ||| || || || || | ||| | | ||| || |||| ||| Sbjct 8048 TCGATATCACCGCAATGTATACCACAAGAAACTCTCATTAGAAGATGTTGTGGTCTCTCT 7989 Query 77132 ACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAG 77191 ||| |||| |||| ||| | | | || || |||| |||||||| || ||||||| Sbjct 7988 ACAATCTTGTTATCAATTCTGAGAAGATAGGACCTTTCTAAAGTTTTGAATGCAAAATAA 7929 Query 77192 TTGTATGAAAAGTCTCTT 77209 | ||| ||| ||| || Sbjct 7928 TCATATTCAAAATCTTTT 7911 >seq45 Length=29048 Score = 226 bits (250), Expect = 4e-54 Identities = 574/864 (66%), Gaps = 12/864 (1%) Strand=Plus/Plus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 ||||||||| |||| ||||| || || | || || || ||||| ||||| |||| Sbjct 19156 CATAACTCCAGCCATTTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTG 19215 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAA-ATC 46444 | ||| ||| ||||| |||| || ||||||| |||||| |||||||| | ||| Sbjct 19216 GAGTGAAATAAGATCCATCCAATCGAAGGGATTAGAAACATTGTAAATTTTGGGGATATC 19275 Query 46445 CTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAAT 46504 | | | ||| |||||||| || || ||||| ||||| ||| | | | | | Sbjct 19276 CAGAG-CAAAAAGGAGTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGT 19334 Query 46505 TCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAG 46564 ||||||| || || | || || || | || |||||| | | ||| | | |||| Sbjct 19335 TCATTCCAATAAGATCAACAGGAAGTGAGTCACAAAGAAAGTTTCTTTCTACATCAACAG 19394 Query 46565 CATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGG---ATGCATCAAATGTTTAA 46621 | || || || || | |||| | | ||||| | || | | | ||| Sbjct 19395 CTTCTGAGATAATTTGTTGTACTCTAGA---AGTTGGTAGTTTATATTTAAGAGCTTTGT 19451 Query 46622 ACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAA 46681 | ||||| || ||||| ||| ||| | |||||||| | ||||| | ||| ||||| | Sbjct 19452 ATATTAAGCAAGCAAAGTCAGCATGTAATCCTTCATCACGGCTAATAAGTTCATTAGAGA 19511 Query 46682 ATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCA 46740 |||| || |||||||| |||||||||||||| ||||||||||||| | | |||| | ||| Sbjct 19512 ATGTAAGTCCAGGCATAAGTCCACGCTTTTTAAGCCAAAATATAG-CACAAAAGCTACCA 19570 Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCA 46800 ||||| | || ||||||||||| |||| | | || |||||| | || ||| Sbjct 19571 GAAAAAAGAATTCCTTCTACAGCACAGAATCCAATAATTCTCTCAGCAAAAGATCTTTCA 19630 Query 46801 TTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATA 46860 |||| ||||| | ||||| || || || || || || || || ||| Sbjct 19631 TTATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATATGAGAAATA 19690 Query 46861 GCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTA 46920 || | ||| || | | ||| | | || ||| |||| | || ||||| | | Sbjct 19691 GCCTCAAAAAGCATTTGACGTTCTTTTATTTCAGTAATATATCTGTCAATTAACAAGGAA 19750 Query 46921 TACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 46980 || |||| |||||| | ||||||||||| |||||| | ||| | ||||||||| Sbjct 19751 TATGTTTCATTATGAATTTGCTCAATAGCCATTTGAAATGCATAATACATTCTTGCTTCT 19810 Query 46981 GTAATCTGTACCTCT-GTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACT 47039 | || |||| ||| || |||| | ||| ||| || || | || || |||||||| Sbjct 19811 GGGATATGTATTTCTCTTAGGAAATTG-ACAGCCAAGTTTTCCATAACAATACCATCACT 19869 Query 47040 AGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATT 47099 ||||||||| || || | || | ||||||||||| | | ||| | | || | | Sbjct 19870 AGCAGCAAAGAAAGCTAGGACGTATTTAATAAAATGTCTCTCAGGGTCTTTAAGACTTTC 19929 Query 47100 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGC 47159 ||| || | |||||| || || | ||||||| ||| || || || ||||| Sbjct 19930 CCAATCTCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAACCCAAAACGATGCTTCTGC 19989 Query 47160 TTTTTTATACATATTCCATATATC 47183 ||||||||||||| ||| ||||| Sbjct 19990 TTTTTTATACATAAACCAAATATC 20013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712931940376320