Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001835715.1_202016- 10-24] 276 sequences; 9,100,863 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq124 181 2e-40 seq69 149 1e-30 seq3 122 2e-22 >seq124 Length=102498 Score = 181 bits (200), Expect = 2e-40 Identities = 166/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 282890 TACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTC 282949 ||||| |||||| ||| ||||||||||| ||||| |||| ||| || | ||||| || Sbjct 26983 TACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTTCTTCCATCTTC 26924 Query 282950 TAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 || ||| ||||| || ||||| ||||||||||| ||| ||||| |||||||| ||||| Sbjct 26923 TAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTGGAATTCCCTCCTTATCTTG 26864 Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 |||||||| || ||| | || || |||||||| | ||| ||||| | |||||| ||||| Sbjct 26863 AATCTTTGCCTTAACGTTCTCAATTGTGTCCGATGGTTCAACTTCTAAAGTGATTGTCTT 26804 Query 283070 ACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || || || || |||||||| Sbjct 26803 TCCTGTCAATGTTTTGACAAAAATCTGCAT 26774 Score = 174 bits (192), Expect = 3e-38 Identities = 161/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282896 ATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTG 282955 |||||| ||| ||||||||||| ||||| |||| ||| || | ||||| |||| ||| Sbjct 26749 ATGTAAAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTTCTTCCATCTTCTAATTG 26690 Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 ||||| || ||||| ||||||||||| ||| ||||| |||||||| ||||| ||||| Sbjct 26689 CTTCCCCGCGAAGATTAAACGTTGTTGATCAGGTGGAATTCCCTCCTTATCTTGAATCTT 26630 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 ||| ||||| | || || |||||||| | ||| || || | |||||| ||||| ||||| Sbjct 26629 TGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACCTCTAAAGTGATTGTCTTTCCCGT 26570 Query 283076 CAAAGTCTTAACGAATATCTGCAT 283099 ||| || || || || |||||||| Sbjct 26569 CAATGTTTTGACAAAAATCTGCAT 26546 Score = 165 bits (182), Expect = 2e-35 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282896 ATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTG 282955 ||| || ||| || ||||| || ||||| |||| || || | |||||||||| ||| Sbjct 26521 ATGCAAAGTGGACTCCTTTTGAATATTGTAATCAGAGAGAGTTCTTCCATCCTCTAATTG 26462 Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 ||||| |||||||| ||||| ||||| ||| ||||| || ||||| || || ||||| Sbjct 26461 CTTCCCTGCAAAGATTAAACGCTGTTGATCAGGTGGAATTCCTTCCTTATCCTGAATCTT 26402 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 ||| ||||| | || || |||||||| | ||| ||||| | |||||| ||||| || || Sbjct 26401 TGCCTTTACATTTTCAATTGTGTCCGATGGTTCAACTTCCAAAGTGATTGTCTTCCCTGT 26342 Query 283076 CAAAGTCTTAACGAATATCTGCAT 283099 |||||||||||| || |||||||| Sbjct 26341 CAAAGTCTTAACAAAAATCTGCAT 26318 >seq69 Length=29286 Score = 149 bits (164), Expect = 1e-30 Identities = 150/195 (77%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || ||||| || ||||| |||| || || | || || || | |||||| || |||||| Sbjct 9030 TCCTTTTGAATATTGTAATCAGATAGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAG 9089 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| ||| ||||| ||| || ||||| || |||||||| |||||||||||||| | Sbjct 9090 ATCAGACGCTGTTGATCAGGTGGGATACCTTCTTTGTCTTGAATCTTTGCTTTTACATTC 9149 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || |||||||| |||| ||| ||||| | ||||| ||||| || || ||||| || || Sbjct 9150 TCAATAGTGTCTGAAGGTTCAACTTCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACA 9209 Query 283089 AATATCTGCATTTTC 283103 || |||||||| ||| Sbjct 9210 AAAATCTGCATCTTC 9224 >seq3 Length=57099 Score = 122 bits (134), Expect = 2e-22 Identities = 314/475 (66%), Gaps = 10/475 (2%) Strand=Plus/Minus Query 273507 ATCTTACCTTTGAAACCTTTGTACCACGGCTTCATGGCTACCATAGGTTCACCCTTCATC 273566 || || ||||||||| ||||||||| || |||| | ||||| ||||| || | | Sbjct 33314 ATTTTCCCTTTGAAAGATTTGTACCAGGGAGTCATTGGAACCATTATCTCACCTTTTAAC 33255 Query 273567 AGTCGCTCCACATTACCAATAATATCTTTAGGGTTGTAACTCGGAACGTTCGTAGACCAA 273626 | || | || || |||||||||||| || ||||| | ||||| || ||| Sbjct 33254 ATTCTTTTCAAGTTCATAATAATATCTTTTGGATTGTAGTTAGGAACTGAACTACTCCAT 33195 Query 273627 CCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGACATAATAT 273686 || || || ||||| || |||||| || ||||| | || || ||||| |||||||| Sbjct 33194 CCTGTTCCTATACCATCAGTACCATTAACTAGAATCATTGGAATGATTGGAACATAATAC 33135 Query 273687 TCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCATCCGTATCA 273746 |||||||| | | ||||| || || | ||| | || |||| |||||| | || Sbjct 33134 AAAGGCTCAATCTGTTGTCCATCATCATATAAGTAAGTTAATAAAGGATCATCAGCTTCT 33075 Query 273747 ACGAAAACCTTTCGCGTC--TGAGGATTCAGTTTCGTGAAAATGTACC---TGGCACTCG 273801 || | | || ||| | ||| ||||| || || || || | ||||| | Sbjct 33074 GGAAATATATATCTAGTCCATTTAGAT--AGTTTAGTAAATATATAACGAGCAGCACTTG 33017 Query 273802 CATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGGCAGTAGCCAGTTTA 273861 || ||||| ||||||| | || |||||| ||||| || || | |||| Sbjct 33016 CA---TCCTTTCCACCTTCCTTTCTACTACCAAATTGACCACATGGTTCTAATAAATTTA 32960 Query 273862 TGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGATACCT 273921 || ||||| || || | | ||||||||||| || ||||| | || || || | Sbjct 32959 GATTATTGCTTCCAACAAAGTTTTGAGCCATATTTACTATAGTACTTTGTAGTGAAGATT 32900 Query 273922 CGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACCTT 273976 | ||||| ||||| || || ||||| || | ||||||| || || ||||||| Sbjct 32899 CTCCGTGATGATAAGCACTATGTTCAGCAACATAACCAGCTAATTGTACAACCTT 32845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046735498468504