Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq30 260 2e-64 >seq30 Length=890313 Score = 260 bits (288), Expect = 2e-64 Identities = 1180/1855 (64%), Gaps = 38/1855 (2%) Strand=Plus/Minus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 |||||||| || ||| | |||| || || | |||||| || || || ||||||| Sbjct 426555 GTGAATTGTATTGGACGTGTTGCGCTTTGAGTTCTTAGATAATAAATGCCAGTTTTTAAT 426496 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || |||| || || |||||||| || || || | | | | | || | | ||| Sbjct 426495 CCTTTTTTCCAGCCATAGAAATGCATCGATGATAACTTTGCAAAGTTAGCATTTTCCATA 426436 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 || ||||| | ||| ||| || || | | ||||| ||||||||||| | || Sbjct 426435 TGAATATTTAAAGACTGAGACTGGCAAATATATGGGCCCCTATCTGCAGCCATATCGATT 426376 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACT-CGCTTAATATCTTCTGGAAG 53046 | |||||||| ||| ||||||| |||||||||| | ||| | || | ||| Sbjct 426375 ACTGTCTTTTGCTTAATCTCCCAAACTGTTTTATAAAGTTCGCGGACGTCCTCCGGGATT 426316 Query 53047 GTTTG--TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 53104 || | |||| |||||| |||| || | | || || | | || | | |||| | Sbjct 426315 GTAAGAATATTTTGAATACTTCCATTATTTGCAATGATATTTTGTTTAAGCCTGTCATCC 426256 Query 53105 CATAATTTTCTCTCGGTTAA--AACTC--TAAGGAGATGCGGATTAACTACTTGAAATTC 53160 |||| | | | | || || || | || | ||| ||||| ||||| |||||| Sbjct 426255 CATAG----CCCAAGTTCAAGCAAGTCATTGAGTAAATGAGGATTCACTACAAAAAATTC 426200 Query 53161 TCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATT 53220 ||||| | ||| || ||| || ||||| ||| | ||||| | | || || || Sbjct 426199 ACCAGAAAGTACCCTACGATGATATATATTTGAAGTAAATGGTTCAAAACTTTCGTTGTT 426140 Query 53221 TCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAG 53280 || || ||||| | || || ||||| ||||| || || | | | ||| | || Sbjct 426139 ACCTAATATTTGCGAGGTAGACGCAGTAGGCATTGGAGCAATTAGAAGTGAATTACGGAG 426080 Query 53281 ACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC---GGTAC 53337 || || | || | ||||| || | ||||| | ||||| | || || Sbjct 426079 CCCATACTTAGAAATCCTTTCTTTAAGTGAATCCCAGTCGCAAAGCCCAGAATCAGGCTT 426020 Query 53338 AACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATC 53397 ||| |||||||||||| ||||| ||| || || ||| || || Sbjct 426019 AACTCCCCACATGTCAAATTGTAGAATACCTTTACTCGCGGGTGACCCAGAATACGTTTC 425960 Query 53398 GTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGT 53457 || || || || || || || || || ||||| ||||| | || | |||||||| Sbjct 425959 ATACGGCCCATCTTTTTCTGCGAGCTCGCAACTAGCCTCGAGCGCCGCATAATAAATAAC 425900 Query 53458 TTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGG-ATAATTTAAG 53515 ||| || |||| |||||||| | | | |||| | | ||| |||| ||| ||| Sbjct 425899 TTCAAAAATCTCCTTATTTAATTTCCTAGCCTTCTCTGAT-TCATATGGCATACG--AAG 425843 Query 53516 -AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 53574 | ||||| ||||| | ||||||||||||||| || | || | |||| | ||| Sbjct 425842 CATCATAAAGCAATCTGCAAGTCCTTGAACACCAATTCCAAGCGGGCGATGTTTTAGATT 425783 Query 53575 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCT 53634 ||| ||| | |||||| | || |||||| ||| | |||||| || | || || Sbjct 425782 TGAGTTTTTACATTCTGGGAGAGAATAATATCCGTGATCAACAATTTTGTTTAAATTCCT 425723 Query 53635 GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT----TGTCCATCTATTA 53690 ||| ||| | || ||||| | || ||| || ||| ||| |||| | Sbjct 425722 CGTAATAACTCTCGTAACTTCCTTTAACTTATCAAAGTCGAATGTTTTGTT-ATCTTTGT 425664 Query 53691 CAAACATGTTCA-ATG--CAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 53747 ||| | ||| | | |||| || ||||| |||||||| || | ||||| || | Sbjct 425663 CAACAAACTTCGGAAGACCAATGGACGCCAGGTTACAAACAGCAATTTCATTTGCGCTAG 425604 Query 53748 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 53807 || | ||| || || ||||| | |||||| | || || || ||||||| || | Sbjct 425603 TGTACTCTATAATTTCGGTGCATAAATTACTGGAAACAATAGTCCCCAAATTTTTCTGGT 425544 Query 53808 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGG 53867 ||||||| | || || ||||| || ||||| ||||| || |||||||| || | Sbjct 425543 TACTCTTACTATTCGCAGCGTCCTTGTAGCAGATGAAAGGCGTTCCTGTTTCAATTTGAG 425484 Query 53868 ATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCT----CTTT 53923 || || || ||| | | ||||| || || ||| || | | Sbjct 425483 CTTGTAGGATTAAAAACCAAAGTTTCTGCGCCTTCAT---AGTTTTTCTTCCGCGGCCCT 425427 Query 53924 TCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCA 53983 || ||||||| | ||| | | | |||||| || |||||||||| | ||| || Sbjct 425426 GCT-TTTCGTACTCTTCATATAGTTTCTTAAACTCATCACCCCAAACATCTTGCAACCCC 425368 Query 53984 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 54043 ||||||||||||||||| | | ||| ||| ||| | || || | | |||||| Sbjct 425367 CTGCATTCATCCGGACACATAAGAGTCCAATCTTGGTCTTTCTCAACCCTCTCCATAAAT 425308 Query 54044 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 54103 |||||||||| |||||| || ||| || || | | ||| ||||| ||||| | Sbjct 425307 AGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGGCATCTCATCTCCTCTTTTCCATGA 425248 Query 54104 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTC 54163 |||||| | | || | ||| ||| || ||| ||||||||| ||||| || || | Sbjct 425247 TTCTTTCTTATTTCAATAAACTCCACAACATCTACATGCCACGGCTCCAAATAAATTGCA 425188 Query 54164 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 54223 || | || ||||| ||| || || || || |||||||| || | ||||||||| Sbjct 425187 ATCGCACCCTTGCGTTTCCCTCCACCTTGGTCAATATATCTAGCAGTATCATTATAAACG 425128 Query 54224 CTCAACATTGGAATAATACCATTGGATGCACCATTGGT-CCCGGAGATATAGCTTCCACT 54282 | ||||||||||| | ||||| || |||||||| ||| || ||||| || | Sbjct 425127 CGTAACATTGGAATCAGTCCATTAGACCTTCCATTGGTACCCCGA-ATATACGAGCCCGT 425069 Query 54283 GGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCA 54342 | | ||||||||| | || | || | || || || | ||| || ||| || Sbjct 425068 TCCTCTAATATTACTCACTGCCACTCCAAGACCGCCGGCAGTCTTACTAATATTTGCACA 425009 Query 54343 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 54402 | | ||| ||| ||| | || || |||||| ||| || || | |||| |||||| Sbjct 425008 TTTTGTTAGCGTGTCAAAAATACCATCTATAGAATCCTCTGGTATTCTGAGTAAAAAACA 424949 Query 54403 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 54462 |||||||| | | ||| || | || || | ||||| | ||| || ||||| Sbjct 424948 AGATGACATTTGAGGTCTTGGAGTGCCGGAGTTGAAAAGCGTAGGTGTAGCATGGGTAAA 424889 Query 54463 CCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAAT 54522 | |||| || | || || || || |||| || | || ||||| | ||| || Sbjct 424888 ATACTTTTGCGATAATAATTTATATGTTTCGAGTGCAGCCTCGATATCACCGCAATGTAT 424829 Query 54523 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 54582 || | || | ||||| | || || ||||| || || |||||||| | ||| | Sbjct 424828 ACCACAAGAAACTCTCATTAGAAGATGTTGTGGTCTCTCTACAATCTTGTTATCAATTCT 424769 Query 54583 CAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 54637 || | ||||| |||| |||||||| || ||||||| | ||| ||| ||| Sbjct 424768 GAGAAGATAGGACCTTTCTAAAGTTTTGAATGCAAAATAATCATATTCAAAATCT 424714 Score = 190 bits (210), Expect = 2e-43 Identities = 607/921 (66%), Gaps = 39/921 (4%) Strand=Plus/Plus Query 23789 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGAGA---CATAACTCCCATTTT 23845 ||| || || ||||||| ||| | | ||| |||||| ||||||||| | Sbjct 146765 TTAGAATTCTGCATCTAAGTCAAACTTTTGGTCATCTTGATTAACCATAACTCCAGCCAT 146824 Query 23846 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 23905 ||| ||||| || || | ||||| || ||||| |||||||||| | ||| ||| || Sbjct 146825 TTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTGGAGTGAAATAAGATC 146884 Query 23906 CATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCAA 23965 ||| ||||| | ||||| | |||||| || ||| | | ||| || ||| | Sbjct 146885 CATCCAATCGAAGGGATTAGAAACATTGTAAATTTTGGGGATATCCAGAGCAAAAAGGAG 146944 Query 23966 TCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 24025 |||||| || ||||| || |||||| ||| | | | | |||||||| ||||| | Sbjct 146945 TCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGTTCATTCCAATAAGATC 147004 Query 24026 AACTGGAAG--AGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 24083 ||| ||||| || |||| |||||| | | ||| | | || || |||| ||||| Sbjct 147005 AACAGGAAGTGAGTCACA--AAGAAAGTTTCTTTCTACATCAACAGCTTCTGAGATAATT 147062 Query 24084 GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATG---TTTAAACATCAAACATGCG 24140 | |||| | | | ||| | | || | | ||| | || || || || Sbjct 147063 TGTTGTACTCTAGA---AGTTGGTAGTTTATATTTAAGAGCTTTGTATATTAAGCAAGCA 147119 Query 24141 AAATC-GCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 24199 || || ||| |||| || || || | ||||| | ||| || || || || ||||| || Sbjct 147120 AAGTCAGCA-TGTAATCCTTCATCACGGCTAATAAGTTCATTAGAGAATGTAAGTCCAGG 147178 Query 24200 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTC 24258 ||| || ||||||||||||||||||||||| | | |||| | | |||||||| | ||||| Sbjct 147179 CATAAGTCCACGCTTTTTAAGCCAAAATATAG-CACAAAAGCTACCAGAAAAAAGAATTC 147237 Query 24259 CTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTC---ATGTATCC 24315 ||||||| || || |||||| ||| || || || | || || || |||| Sbjct 147238 CTTCTACAGCACAGAATCCAATAATTCTCTCAGCAAAA---GATCTTTCATTATTCATCC 147294 Query 24316 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGA 24375 | || ||||| || || |||||||| || || || ||||| | ||| | Sbjct 147295 ATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATATGAGAAATAGCCTCAAAAA 147354 Query 24376 G-AT---AGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 24431 | || | || ||| ||| || ||| |||| | ||||| || | ||| || Sbjct 147355 GCATTTGACGTTCTTTTATT----TCAGTAATATATCTGTCAATTAACAAGGAATATGTT 147410 Query 24432 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACA-TCTAGCCTCGGTAAT 24490 || |||||| | ||||| |||||||||||| | || | ||| ||| || || | || Sbjct 147411 TCATTATGAATTTGCTCAATAGCCATTTGAAATGCATA-ATACATTCTTGCTTCTGGGAT 147469 Query 24491 CTGTACTTCT-ATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 24549 |||| |||| || |||| | | || || ||||| | || || || ||||| || | Sbjct 147470 ATGTATTTCTCTTAGGAAATTG-ACAGCCAAGTTTTCCATAACAATACCATCACTAGCAG 147528 Query 24550 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT--AGTTTATTCCA 24607 |||| || || | || | ||| ||||||| | | || ||| || || | | ||| Sbjct 147529 CAAAGAAAGCTAGGACGTATTTAATAAAATGTCTCTC--AGGGTCTTTAAGACTTTCCCA 147586 Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667 ||| | |||||| | || || | ||||| |||||| ||||| ||||| || Sbjct 147587 ATCTCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAACCCAAAACGATGCTTCTGCTTT 147646 Query 24668 TTTATACATATTCCAGATGTC 24688 |||||||||| ||| || || Sbjct 147647 TTTATACATAAACCAAATATC 147667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721310560720