Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq4 145 1e-29 seq1 140 5e-28 >seq4 Length=775478 Score = 145 bits (160), Expect = 1e-29 Identities = 176/239 (74%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 124533 AATACAAT---GCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATT 124589 |||||||| ||| || ||| | ||||| | ||||| || || || ||| | || || Sbjct 280713 AATACAATTATGCAGATTTTTGTTAAGACTTTGACAGGAAAGACAATCACTTTGGAAGTT 280772 Query 124590 GAAGCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCA 124649 ||| || || |||||| ||| |||| || ||||||||||| ||||| || ||| Sbjct 280773 GAACCATCGGACACAATTGAAAATGTAAAGGCAAAGATTCAAGATAAGGAAGGAATTCCA 280832 Query 124650 CCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAA 124709 ||||||||||| | | || |||||||| || |||||||||||| | |||| | Sbjct 280833 CCTGATCAACAGCGTTTAATCTTTGCAGGGAAGCAATTAGAGGATGGAAGAACTCTCTCT 280892 Query 124710 GATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||||||||| || || ||||||||||| || ||| | | |||||||||| Sbjct 280893 GATTACAATATTCAAAAGGAGTCCACTTTGCATTTAGTCTTAAGACTCAGAGGTGGTAT 280951 Score = 127 bits (140), Expect = 3e-24 Identities = 172/236 (73%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || ||| | ||||| || || || ||| |||| ||||| || Sbjct 281177 ATGCAGATTTTTGTCAAAACATTGACAGGAAAGACAATCACTTTAGAAGTTGAACCATCG 281236 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || |||||| || |||| || || ||||||||||| || || || ||||||||||| Sbjct 281237 GACACAATTGAGAACGTTAAGGCA-AAGATTCAAGATAAGGAGGGAATTCCACCTGATCA 281295 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || || ||||| || |||||||| ||| | |||| | ||||| || Sbjct 281296 ACAACGTTTAATCTTCGCAGGGAAGCAATTAGAAGATGGAAGAACTCTTTCTGATTACAA 281355 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAA 124772 ||| |||||||| || ||||| |||||||| || | | ||||||| || |||| Sbjct 281356 TATCCAAAAAGAGTCCACTTTACATTTGGTATTGAGACTTAGAGGTGGAATGTAAA 281411 >seq1 Length=677778 Score = 140 bits (154), Expect = 5e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| |||| || |||| || || || || || | || ||||| | Sbjct 543090 ATGCAGATTTTTGTAAAAACTTTAACTGGGAAGACCATCACATTGGAAGTTGAACCTTCA 543031 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| ||||| || |||||||| ||||||||||| |||||||||||| Sbjct 543030 GACACTATTGAGAATGTAAAAGCAAAGATTCAAGACAAAGAAGGTATCCCACCTGATCAA 542971 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| ||||||||||| || || || | || || ||||| ||| Sbjct 542970 CAGCGTCTGATCTTTGCTGGAAAACAATTGGAAGACGGTAGGACTCTATCTGATTACAAT 542911 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 |||||||| || || |||||||| ||||| || | || |||||||| ||| Sbjct 542910 ATTCAAAAGGAGTCTACTTTGCACTTGGTATTGAGACTAAGAGGTGGTGTTA 542859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455631715200