Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq12 109 1e-18 >seq12 Length=335020 Score = 109 bits (120), Expect = 1e-18 Identities = 139/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 135753 TATTGTAAGAGCCTGGGATACAAACAAACCACTCATTTTCTGTCCTGCAATGAATACTCT 135812 ||||| |||||| |||||| ||||| || |||| | |||||||||||||| | | | Sbjct 40431 TATTGCAAGAGCTTGGGATTTCAACAAGCCTATCATAGTTTGTCCTGCAATGAACAATTT 40490 Query 135813 TATGTGGGAACATCCTATTACAGAAAAACATATAGATACGTTAAAATATATGGGTTTCAT 135872 ||||||||||||||| ||||| || ||| ||||| || |||||| | | |||| | Sbjct 40491 TATGTGGGAACATCCGATTACTTTAAGACAAATAGACACTCTAAAATCTTTTGGTTATAA 40550 Query 135873 AGAAATAGAATGCATAGaaaaaaaaCTAGCATGTGGAGACGTA-GGAAATGGTGCTATGG 135931 || |||| ||||| || ||| | |||||||| || ||| |||| |||| ||| Sbjct 40551 AGTAATATTTCCAATAGAGAAGAAATTGGCATGTGGCGA-GTATGGAATGGGTGGAATGC 40609 Query 135932 CAGAAGTTG 135940 |||| ||| Sbjct 40610 AAGAAATTG 40618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923196349941560