Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq4 138 2e-27 seq1 120 5e-22 >seq4 Length=775478 Score = 138 bits (152), Expect = 2e-27 Identities = 114/139 (82%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||||||||| ||||||||||||||||| || ||||| ||||| ||||| | Sbjct 281405 TTCCACCTCTAAGTCTCAATACCAAATGTAAAGTGGACTCTTTTTGGATATTGTAATCAG 281346 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||||||||| | ||| |||||||| || || || || || || | ||| ||||| || | Sbjct 281345 AAAGAGTTCTTCCATCTTCTAATTGCTTCCCTGCGAAGATTAAACGTTGTTGATCAGGTG 281286 Query 146169 GAATTCCTTCTTTATCTTG 146187 ||||||| || |||||||| Sbjct 281285 GAATTCCCTCCTTATCTTG 281267 Score = 120 bits (132), Expect = 5e-22 Identities = 111/138 (80%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| |||||||| || ||||| ||||| || || ||| || ||||| ||||| || Sbjct 280948 CCACCTCTGAGTCTTAAGACTAAATGCAAAGTGGACTCCTTTTGA-ATATTGTAATCAGA 280890 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 |||||||| | ||| |||||||| || || ||||| || || | || ||||| || || Sbjct 280889 GAGAGTTCTTCCATCCTCTAATTGCTTCCCTGCAAAGATTAAACGCTGTTGATCAGGTGG 280830 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| |||||||| Sbjct 280829 AATTCCTTCCTTATCTTG 280812 >seq1 Length=677778 Score = 120 bits (132), Expect = 5e-22 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| ||||| |||||||| || |||||||| || ||| || ||||| ||||| || Sbjct 542864 CCACCTCTTAGTCTCAATACCAAGTGCAAAGTAGACTCCTTTTGA-ATATTGTAATCAGA 542922 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||| || | || || ||||||||||||||||| |||| | || ||||| || || Sbjct 542923 TAGAGTCCTACCGTCTTCCAATTGTTTTCCAGCAAAGATCAGACGCTGTTGATCAGGTGG 542982 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 || |||||||| ||||| ||| |||||| ||| || Sbjct 542983 GATACCTTCTTTGTCTTGAATCTTTGCTTTTACATTCTCAATAGTGTCTGAAGGTTCAAC 543042 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 ||| | |||||| || || || ||||| ||||| | || || ||||| || Sbjct 543043 TTCCAATGTGATGGTCTTCCCAGTTAAAGTTTTTACAAAAATCTGCATCTT 543093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743526037530880