Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq30 226 3e-54 >seq30 Length=890313 Score = 226 bits (250), Expect = 3e-54 Identities = 577/860 (67%), Gaps = 25/860 (3%) Strand=Plus/Plus Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 |||||||||| | |||||||||||||||||||| ||||| |||| | ||||||| | Sbjct 146824 TTTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTGGAGTGAAATAAGAT 146883 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTA--TTTATCGCATCCCAATTCCAACAA 16062 |||| |||| || ||||| ||| || ||| ||| | || | | ||| || Sbjct 146884 CCATCCAATCGAAGGGATTA---GAAACATTGTAAATTTTGGGGATATCCAGAGCAAAAA 146940 Query 16063 TAA-TCTATCCGCCACAAATTCTATATACTGTTTCATTAAATC-ACAGTTCATTCCTATT 16120 | |||||| || |||||||| ||||| || ||| || || | |||||||||| || Sbjct 146941 GGAGTCTATCAGCTACAAATTCAATATATTGAGCCAT-AAGTCTAGAGTTCATTCCAATA 146999 Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180 | | |||||| | || || | ||| ||| |||||| || ||| ||||| ||| Sbjct 147000 AGATCAACAGGAAGTGAGTCACAAAGAAAGTTTCTTTCTACATCAACAGCTTCTGAGATA 147059 Query 16181 ATATCTCTTACTACACTATTTAACGGAGGGTTTAAT-AAGTG-TTTAAACATTATACAAG 16238 || | | |||| | | || | || | || | ||| | ||| | |||| |||| Sbjct 147060 ATTTGTTGTACTCTAGAAGTTG--GTAGTTTATATTTAAGAGCTTTGTATATTAAGCAAG 147117 Query 16239 CAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTG 16298 |||| ||| ||| |||||||| || | || || | || || || |||||||| || | Sbjct 147118 CAAAGTCAGCATGTAATCCTTCATCACGGCTAATAAGTTCATTAGAGAATGTAAGTCCAG 147177 Query 16299 GCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATAC 16358 |||| ||||| || ||||||| |||||||||||| ||| ||||||||| | || | Sbjct 147178 GCATAAGTCCACGCTTTTTAAGCCAAAATATAGCACAAAAGCTACCAGAAAAAAGAATTC 147237 Query 16359 CTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatcc 16418 |||| || || ||| ||| | || |||| | | | ||| | ||| ||| |||| Sbjct 147238 CTTCTACAGCACAGAATCCAATAATTCTCTCAGCAAAAGATCTTTCATTA--TTC-ATCC 147294 Query 16419 attttttagcccaatttgctttttgtttAAC-ACAGTTCATGTTCTCTATTGCATTAAAT 16477 |||| | ||||| | |||||| | |||||| ||| || | || || | || Sbjct 147295 ATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAG-AAATATGAGAAATAGCCTCAA-- 147351 Query 16478 AAATAAttt--ttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTT 16535 ||| |||| |||||| | || |||||| | || |||| || ||| ||| Sbjct 147352 AAAGCATTTGACGTTCTTTTATTTCAGTAATATATCTGTCAATTAACAAGGAATATGTTT 147411 Query 16536 CTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTC--GGATAT 16593 | |||||| | ||| || || || ||||| ||||| | ||| ||||| |||||| Sbjct 147412 CATTATGAATTTGCTCAATAGCCATTTGAAATGCATAATACATTCTTGCTTCTGGGATAT 147471 Query 16594 TTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGC 16653 | | || || ||| | | || |||||||| |||| || ||||| ||||| || Sbjct 147472 GTATTTCTCTTAGGAAA--TTGACAGCCAAGTTTTCCATAACAATACCATCACTAGCAGC 147529 Query 16654 AAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTC 16713 ||| || || || | || ||||||||||| | | || ||| ||| || ||| || Sbjct 147530 AAAGAAAGCTAGGACGTATTTAATAAAATGTCTCTCAGGGTCTTTAAGACTTTCCCAATC 147589 Query 16714 AGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTT 16773 | ||||| ||| || | |||||| | |||||| || || | || ||||| Sbjct 147590 TCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAACCCAAAACGATGCTTCTGCTTTTTT 147649 Query 16774 ATACATTTTCCATATGTCTT 16793 |||||| ||| || |||| Sbjct 147650 ATACATAAACCAAATATCTT 147669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511774525400