Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq30 223 4e-53 >seq30 Length=890313 Score = 223 bits (246), Expect = 4e-53 Identities = 836/1297 (64%), Gaps = 22/1297 (2%) Strand=Plus/Minus Query 62593 ATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCT 62652 ||||||||||||| ||||| ||| || || ||| || ||||| || || || || | Sbjct 426002 ATTGTAGAATACCTTTACTCGCGGGTGACCCAGAATACGTTTCATACGGCCCATCTTTTT 425943 Query 62653 CAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTAT 62712 | || || | ||||| ||||| | || | |||||||| |||||| |||| ||||| Sbjct 425942 CTGCGAGCTCGCAACTAGCCTCGAGCGCCGCATAATAAATAACTTCAAAAATCTCCTTAT 425883 Query 62713 TTAGAT-CTTGTGCTTCCGGGCTATCAAATGG-ATAATTTAAG-AGAATAAACGCGTCCG 62769 ||| | | | |||| | | ||| |||| ||| ||| | ||||| || | Sbjct 425882 TTAATTTCCTAGCCTTCTCTGAT-TCATATGGCATACG--AAGCATCATAAAGCAATCTG 425826 Query 62770 CTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTG 62829 | | ||||||||||||||| || | || | |||| | ||| ||| ||| | ||||| Sbjct 425825 CAAGTCCTTGAACACCAATTCCAAGCGGGCGATGTTTTAGATTTGAGTTTTTACATTCTG 425766 Query 62830 GAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCA 62889 | | || |||||| ||| | |||||| || | ||| || ||| ||| | | Sbjct 425765 GGAGAGAATAATATCCGTGATCAACAATTTTGTTTAAATTCCTCGTAATAACTCTCGTAA 425706 Query 62890 CATCCTTCAGTTTGAGAAAATCAAATCGCCC---ATCTATTACAAACATGTTCA-ATG-- 62943 | ||||| | || ||| || ||| |||| | ||| | ||| | | Sbjct 425705 CTTCCTTTAACTTATCAAAGTCGAATGTTTTGTTATCTTTGTCAACAAACTTCGGAAGAC 425646 Query 62944 CAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAG 63003 ||| || ||||| ||||| || || | ||||| || | || | ||| || || | Sbjct 425645 CAATGGACGCCAGGTTACAAACAGCAATTTCATTTGCGCTAGTGTACTCTATAATTTCGG 425586 Query 63004 TGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACG 63063 |||| | |||||| | ||||| || ||||||| || |||||||| | || | Sbjct 425585 TGCATAAATTACTGGAAACAATAGTCCCCAAATTTTTCTGGTTACTCTTACTATTCGCAG 425526 Query 63064 CATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCC 63123 | ||||| || ||||| || || || |||||||| |||| || || || || Sbjct 425525 CGTCCTTGTAGCAGATGAAAGGCGTTCCTGTTTCAATTTGAGCTTGTAGGATTAAAAACC 425466 Query 63124 AGACGACTC-GAGCCTTTATTATAGATTTGTATCT----CCTTTCTCTTTCGTATAGAGT 63178 | | | || | ||||| || || ||| || || | || ||||||| Sbjct 425465 AAA-GTTTCTGCGCCTTCAT---AGTTTTTCTTCCGCGGCCCTGCT-TTTCGTACTCTTC 425411 Query 63179 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACA 63238 ||| | | | ||||| || |||||||||| | ||| | |||||||||||||| Sbjct 425410 ATATAGTTTCTTAAACTCATCACCCCAAACATCTTGCAACCCCCTGCATTCATCCGGACA 425351 Query 63239 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63298 ||| | | ||| ||| ||| | || || | | |||||| |||||||||| |||||| Sbjct 425350 CATAAGAGTCCAATCTTGGTCTTTCTCAACCCTCTCCATAAATAGATCAGGAACCCAAAG 425291 Query 63299 AGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63358 || ||| || || | ||| ||||| ||||| ||||||| | | || | Sbjct 425290 GGCAGGAAAGAGGTCACGGCATCTCATCTCCTCTTTTCCATGATTCTTTCTTATTTCAAT 425231 Query 63359 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63418 ||| ||| || ||| ||||||||| ||||| || || || || | || ||||| Sbjct 425230 AAACTCCACAACATCTACATGCCACGGCTCCAAATAAATTGCAATCGCACCCTTGCGTTT 425171 Query 63419 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63478 ||| || || || || |||||||| || | ||||||||| | ||||||||||| | Sbjct 425170 CCCTCCACCTTGGTCAATATATCTAGCAGTATCATTATAAACGCGTAACATTGGAATCAG 425111 Query 63479 ACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAAT 63538 || || || | ||||||||||| ||||| || | | | ||||||||| | Sbjct 425110 TCCATTAGACCTTCCATTGGTACCCCGAATATACGAGCCCGTTCCTCTAATATTACTCAC 425051 Query 63539 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATA 63598 || | || | || || || | ||| || ||| ||| | ||| ||||||| | Sbjct 425050 TGCCACTCCAAGACCGCCGGCAGTCTTACTAATATTTGCACATTTTGTTAGCGTGTCAAA 424991 Query 63599 GATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63658 || || ||||| ||| || || | |||| |||||| |||||||| | | Sbjct 424990 AATACCATCTATAGAATCCTCTGGTATTCTGAGTAAAAAACAAGATGACATTTGAGGTCT 424931 Query 63659 AGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63718 | ||| || | || || | ||||| | ||| || ||||| | |||| || | || Sbjct 424930 TGGAGTGCCGGAGTTGAAAAGCGTAGGTGTAGCATGGGTAAAATACTTTTGCGATAATAA 424871 Query 63719 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 63778 || || || || | || | || ||||| | ||| || || | || | ||| Sbjct 424870 TTTATATGTTTCGAGTGCAGCCTCGATATCACCGCAATGTATACCACAAGAAACTCTCAT 424811 Query 63779 TAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63838 || | || || ||||| || ||||| ||||| | ||| | | | ||||| |||| Sbjct 424810 TAGAAGATGTTGTGGTCTCTCTACAATCTTGTTATCAATTCTGAGAAGATAGGACCTTTC 424751 Query 63839 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63875 |||||||| || ||||||| | ||| ||| ||| Sbjct 424750 TAAAGTTTTGAATGCAAAATAATCATATTCAAAATCT 424714 Score = 158 bits (174), Expect = 2e-33 Identities = 601/922 (65%), Gaps = 41/922 (4%) Strand=Plus/Plus Query 33236 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGAGA---CATAACTCCCATTTT 33292 ||| || || ||||||| ||| | | ||| |||||| ||||||||| | Sbjct 146765 TTAGAATTCTGCATCTAAGTCAAACTTTTGGTCATCTTGATTAACCATAACTCCAGCCAT 146824 Query 33293 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33352 ||| ||||| || || | ||||| || ||||| ||||| |||| | ||| ||| || Sbjct 146825 TTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTGGAGTGAAATAAGATC 146884 Query 33353 CATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAA 33412 ||| |||| || ||||| | ||||||||||||||| | ||| || ||| | Sbjct 146885 CATCCAATCGAAGGGATTAGAAACATTGTAAATTTTGGGGATATCCAGAGCAAAAAGGAG 146944 Query 33413 TCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 33472 |||||| || || ||||| |||||| ||| | | | | |||||||| || || | Sbjct 146945 TCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGTTCATTCCAATAAGATC 147004 Query 33473 AACTGGAA--GAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530 ||| |||| ||| |||| |||||| | | ||| | || || | || ||||| Sbjct 147005 AACAGGAAGTGAGTCACA--AAGAAAGTTTCTTTCTACATCAACAGCTTCTGAGATAATT 147062 Query 33531 AATCTAACGGTTTCT-TCACTCGGTGG---ATGTAATAAATGTTTAAACATCAAACATGC 33586 | || ||| | | ||| | || | | | ||| | || || || || Sbjct 147063 TGTTGTAC----TCTAGAAGTTGGTAGTTTATATTTAAGAGCTTTGTATATTAAGCAAGC 147118 Query 33587 GAAATC-GCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGG 33645 || || ||| || | || || || | ||||| | ||| ||||| || || ||||| | Sbjct 147119 AAAGTCAGCA-TGTAATCCTTCATCACGGCTAATAAGTTCATTAGAGAATGTAAGTCCAG 147177 Query 33646 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCGGAAAAGAAGATT 33704 |||| || ||||||||||||||||||||||| | | | || | | || ||||| | ||| Sbjct 147178 GCATAAGTCCACGCTTTTTAAGCCAAAATATAGCA-CAAAAGCTACCAGAAAAAAGAATT 147236 Query 33705 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTC---ATGTATC 33761 |||||||| ||| || |||||| |||||| || || | || || || ||| Sbjct 147237 CCTTCTACAGCACAGAATCCAATAATTCTCTCAGCAAAA---GATCTTTCATTATTCATC 147293 Query 33762 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33821 || || ||||| || || |||||||| || || || || || | ||| Sbjct 147294 CATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATATGAGAAATAGCCTCAAAA 147353 Query 33822 AG-AT---AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 || || | || ||| ||| || ||| ||| | || || || | ||| | Sbjct 147354 AGCATTTGACGTTCTTTTATT----TCAGTAATATATCTGTCAATTAACAAGGAATATGT 147409 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA-TCTAGCCTCGGTAA 33936 ||| |||||| | ||||| ||||| |||||| | || | ||| ||| || || | | Sbjct 147410 TTCATTATGAATTTGCTCAATAGCCATTTGAAATGCATA-ATACATTCTTGCTTCTGGGA 147468 Query 33937 TCTGCACTTCT-GTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCT 33995 | || | |||| || |||| | | || || ||||| | || || |||||||| || Sbjct 147469 TATGTATTTCTCTTAGGAAATTG-ACAGCCAAGTTTTCCATAACAATACCATCACTAGCA 147527 Query 33996 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT--AGTTTATTCC 34053 ||||| || || | || | ||| ||||||| | | || ||| || || | | || Sbjct 147528 GCAAAGAAAGCTAGGACGTATTTAATAAAATGTCTCTC--AGGGTCTTTAAGACTTTCCC 147585 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 |||| | |||||| | || || | ||||| |||||| ||||| ||||| | Sbjct 147586 AATCTCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAACCCAAAACGATGCTTCTGCTT 147645 Query 34114 TTTTATACATATTCCAGATGTC 34135 ||||||||||| ||| || || Sbjct 147646 TTTTATACATAAACCAAATATC 147667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817292963920