Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq30 251 9e-62 >seq30 Length=890313 Score = 251 bits (278), Expect = 9e-62 Identities = 1179/1855 (64%), Gaps = 38/1855 (2%) Strand=Plus/Minus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 |||||||| || ||| | |||| || || | |||||| || || || ||||||| Sbjct 426555 GTGAATTGTATTGGACGTGTTGCGCTTTGAGTTCTTAGATAATAAATGCCAGTTTTTAAT 426496 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || |||| || || |||||||| | || || | | | | | || | | ||| Sbjct 426495 CCTTTTTTCCAGCCATAGAAATGCATCGATGATAACTTTGCAAAGTTAGCATTTTCCATA 426436 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 || ||||| | ||| ||| || || | | ||||| ||||||||||| | || Sbjct 426435 TGAATATTTAAAGACTGAGACTGGCAAATATATGGGCCCCTATCTGCAGCCATATCGATT 426376 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACT-CGCTTAATATCTTCTGGAAG 65077 | |||||||| ||| ||||||| |||||||||| | ||| | || | ||| Sbjct 426375 ACTGTCTTTTGCTTAATCTCCCAAACTGTTTTATAAAGTTCGCGGACGTCCTCCGGGATT 426316 Query 65078 GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135 || | |||| ||||| |||| || ||| || || | | || | | |||| | Sbjct 426315 GTAAGAATATTTTGAATACTTCCATTATTTGCAATGATATTTTGTTTAAGCCTGTCATCC 426256 Query 65136 CATAATTTTCTCTCGGTTAA--AACTC--TAAGGAGATGCGGATTAACTACTTGAAATTC 65191 |||| | | | | || || || | || | ||| ||||| ||||| |||||| Sbjct 426255 CATAG----CCCAAGTTCAAGCAAGTCATTGAGTAAATGAGGATTCACTACAAAAAATTC 426200 Query 65192 TCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATT 65251 ||||| | ||| || ||| || ||||| ||| | ||||| | | || || || Sbjct 426199 ACCAGAAAGTACCCTACGATGATATATATTTGAAGTAAATGGTTCAAAACTTTCGTTGTT 426140 Query 65252 TCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAG 65311 || || ||||| | || || ||||| ||||| || || | | | ||| | || Sbjct 426139 ACCTAATATTTGCGAGGTAGACGCAGTAGGCATTGGAGCAATTAGAAGTGAATTACGGAG 426080 Query 65312 ACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC---GGTAC 65368 || || | || | ||||| || | ||||| | ||||| | || || Sbjct 426079 CCCATACTTAGAAATCCTTTCTTTAAGTGAATCCCAGTCGCAAAGCCCAGAATCAGGCTT 426020 Query 65369 AACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATC 65428 ||| |||||||||||| ||||| ||| || || ||| || || Sbjct 426019 AACTCCCCACATGTCAAATTGTAGAATACCTTTACTCGCGGGTGACCCAGAATACGTTTC 425960 Query 65429 GTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGT 65488 || || || || || || || || || ||||| ||||| | || | |||||||| Sbjct 425959 ATACGGCCCATCTTTTTCTGCGAGCTCGCAACTAGCCTCGAGCGCCGCATAATAAATAAC 425900 Query 65489 TTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGG-ATAATTTAAG 65546 ||| || |||| |||||||| | | | |||| | | ||| |||| ||| ||| Sbjct 425899 TTCAAAAATCTCCTTATTTAATTTCCTAGCCTTCTCTGAT-TCATATGGCATACG--AAG 425843 Query 65547 -AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 65605 | ||||| ||||| | ||||||||||||||| || | || | |||| | ||| Sbjct 425842 CATCATAAAGCAATCTGCAAGTCCTTGAACACCAATTCCAAGCGGGCGATGTTTTAGATT 425783 Query 65606 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT 65665 ||| ||| | |||||| | || |||||| ||| | |||||| || | ||| || Sbjct 425782 TGAGTTTTTACATTCTGGGAGAGAATAATATCCGTGATCAACAATTTTGTTTAAATTCCT 425723 Query 65666 GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTC---ATCTATTAC 65722 ||| ||| | || ||||| | || ||| || ||| | |||| | | Sbjct 425722 CGTAATAACTCTCGTAACTTCCTTTAACTTATCAAAGTCGAATGTTTTGTTATCTTTGTC 425663 Query 65723 AAACATGTTCA-ATG--CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 65779 || | ||| | | ||| || ||||| |||||||| || | ||||| || | Sbjct 425662 AACAAACTTCGGAAGACCAATGGACGCCAGGTTACAAACAGCAATTTCATTTGCGCTAGT 425603 Query 65780 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 65839 || | ||| || || ||||| | |||||| | || || || ||||||| || || Sbjct 425602 GTACTCTATAATTTCGGTGCATAAATTACTGGAAACAATAGTCCCCAAATTTTTCTGGTT 425543 Query 65840 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 65899 |||||| | || || ||||| || ||||| || || || |||||||| |||| Sbjct 425542 ACTCTTACTATTCGCAGCGTCCTTGTAGCAGATGAAAGGCGTTCCTGTTTCAATTTGAGC 425483 Query 65900 TTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCT----CTTT 65954 || || || ||| | | || | ||||| || || ||| || | | Sbjct 425482 TTGTAGGATTAAAAACCAAA-GTTTCTGCGCCTTCAT---AGTTTTTCTTCCGCGGCCCT 425427 Query 65955 TCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCA 66014 || ||||||| | ||| | | | ||||| || |||||||||| | ||| || Sbjct 425426 GCT-TTTCGTACTCTTCATATAGTTTCTTAAACTCATCACCCCAAACATCTTGCAACCCC 425368 Query 66015 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 66074 ||||||||||||||||| | | ||| ||| ||| | || || | | |||||| Sbjct 425367 CTGCATTCATCCGGACACATAAGAGTCCAATCTTGGTCTTTCTCAACCCTCTCCATAAAT 425308 Query 66075 AGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 66134 |||||||||| |||||| || ||| | || | | ||| ||||| ||||| | Sbjct 425307 AGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGGCATCTCATCTCCTCTTTTCCATGA 425248 Query 66135 TTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCC 66194 |||||| | | || | ||| ||| || ||| ||||||||| ||||| || || || Sbjct 425247 TTCTTTCTTATTTCAATAAACTCCACAACATCTACATGCCACGGCTCCAAATAAATTGCA 425188 Query 66195 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 66254 || | || ||||| ||| || || || || |||||||| || | ||||||||| Sbjct 425187 ATCGCACCCTTGCGTTTCCCTCCACCTTGGTCAATATATCTAGCAGTATCATTATAAACG 425128 Query 66255 CTCAACATTGGAATAATACCATTGGATGTACCATTGGT-CCCGGAGATATAGCTTCCACT 66313 | ||||||||||| | ||||| || | |||||||| ||| || ||||| || | Sbjct 425127 CGTAACATTGGAATCAGTCCATTAGACCTTCCATTGGTACCCCGA-ATATACGAGCCCGT 425069 Query 66314 TGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 66373 | | | ||||||||| | || | || | || || || | ||| || ||| || Sbjct 425068 TCCTCTAATATTACTCACTGCCACTCCAAGACCGCCGGCAGTCTTACTAATATTTGCACA 425009 Query 66374 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 66433 | | ||| ||| ||| | || || |||||| ||| || || | |||| |||||| Sbjct 425008 TTTTGTTAGCGTGTCAAAAATACCATCTATAGAATCCTCTGGTATTCTGAGTAAAAAACA 424949 Query 66434 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 66493 |||||||| | | ||| || | || || | ||||| | ||| || ||||| Sbjct 424948 AGATGACATTTGAGGTCTTGGAGTGCCGGAGTTGAAAAGCGTAGGTGTAGCATGGGTAAA 424889 Query 66494 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 66553 | |||| || | || || || || || | || | || ||||| | ||| || Sbjct 424888 ATACTTTTGCGATAATAATTTATATGTTTCGAGTGCAGCCTCGATATCACCGCAATGTAT 424829 Query 66554 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 66613 || | || | ||||| | || || ||||| || || |||||||| | ||| | Sbjct 424828 ACCACAAGAAACTCTCATTAGAAGATGTTGTGGTCTCTCTACAATCTTGTTATCAATTCT 424769 Query 66614 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 66668 | | ||||| |||| |||||||| || ||||||| | ||| ||| ||| Sbjct 424768 GAGAAGATAGGACCTTTCTAAAGTTTTGAATGCAAAATAATCATATTCAAAATCT 424714 Score = 206 bits (228), Expect = 4e-48 Identities = 583/876 (67%), Gaps = 36/876 (4%) Strand=Plus/Plus Query 35854 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 35913 ||||||||| |||| ||||| || || | ||||| || ||||| |||||||||| Sbjct 146810 CATAACTCCAGCCATTTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTG 146869 Query 35914 TAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCC 35973 | ||| ||| ||||| ||||||| ||||| |||||| |||||||| | | Sbjct 146870 GAGTGAAATAAGATCCATCCAATCGAAGGGATTAGAAACATTGTAAATTTTGGGGATATC 146929 Query 35974 CAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 36033 || || ||| | |||||| || |||||||| |||||| ||| | | | | || Sbjct 146930 CAGAGCAAAAAGGAGTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGTT 146989 Query 36034 CATTCCTATAAGTTTAACTGGAAG--AGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 36091 |||||| ||||| | ||| ||||| || |||| |||||| | | ||| | | || Sbjct 146990 CATTCCAATAAGATCAACAGGAAGTGAGTCACA--AAGAAAGTTTCTTTCTACATCAACA 147047 Query 36092 GCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATG---TTTA 36148 || |||| ||||| | |||| | | | ||| | | || | | ||| Sbjct 147048 GCTTCTGAGATAATTTGTTGTACTCTAGA---AGTTGGTAGTTTATATTTAAGAGCTTTG 147104 Query 36149 AACATCAAACATGCGAAATC-GCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 36207 | || || || || || || ||| |||| || || || | ||||| | ||| || || Sbjct 147105 TATATTAAGCAAGCAAAGTCAGCA-TGTAATCCTTCATCACGGCTAATAAGTTCATTAGA 147163 Query 36208 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-C 36266 || || ||||| ||||| || ||||||||||||||||||||||| | | |||| | | | Sbjct 147164 GAATGTAAGTCCAGGCATAAGTCCACGCTTTTTAAGCCAAAATATAG-CACAAAAGCTAC 147222 Query 36267 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC 36326 ||||||| | |||||||||||| || || |||||| |||||| || || | | Sbjct 147223 CAGAAAAAAGAATTCCTTCTACAGCACAGAATCCAATAATTCTCTCAGCAAAA---GATC 147279 Query 36327 TGTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 36383 | || || ||||| || ||||| || || |||||||| || || || Sbjct 147280 TTTCATTATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATATGAG 147339 Query 36384 CTATAGCATTAAAGAG-AT---AGtttttttCATTACTATCTTTAACATATGTATCAATC 36439 ||||| | ||| || || | || ||| ||| || ||| |||| | ||||| Sbjct 147340 AAATAGCCTCAAAAAGCATTTGACGTTCTTTTATT----TCAGTAATATATCTGTCAATT 147395 Query 36440 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACA- 36498 || | ||| |||| |||||| | ||||| |||||||||||| | || | ||| Sbjct 147396 AACAAGGAATATGTTTCATTATGAATTTGCTCAATAGCCATTTGAAATGCATA-ATACAT 147454 Query 36499 TCTAGCCTCGGTAATCTGTACTTCT-GTACAAAATCGTTCTGCTAAATTTTCATTCACTA 36557 ||| || || | || |||| |||| || |||| | | || || ||||| | || | Sbjct 147455 TCTTGCTTCTGGGATATGTATTTCTCTTAGGAAATTG-ACAGCCAAGTTTTCCATAACAA 147513 Query 36558 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTG 36617 | || ||||| || ||||| || || | || | ||| ||||||| | | || ||| Sbjct 147514 TACCATCACTAGCAGCAAAGAAAGCTAGGACGTATTTAATAAAATGTCTCTC--AGGGTC 147571 Query 36618 TT--AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 36675 || || | | |||||| | |||||| | || || | ||||| |||||| Sbjct 147572 TTTAAGACTTTCCCAATCTCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAACCCAAAA 147631 Query 36676 TGATGCCTCTGCCTTTTTATACATATTCCAGATGTC 36711 ||||| ||||| |||||||||||| ||| || || Sbjct 147632 CGATGCTTCTGCTTTTTTATACATAAACCAAATATC 147667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172479140760