Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq30 300 2e-76 >seq30 Length=890313 Score = 300 bits (332), Expect = 2e-76 Identities = 1193/1855 (64%), Gaps = 38/1855 (2%) Strand=Plus/Minus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 |||||||| || ||| | |||| || || | |||||| || || || ||||||| Sbjct 426555 GTGAATTGTATTGGACGTGTTGCGCTTTGAGTTCTTAGATAATAAATGCCAGTTTTTAAT 426496 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || |||| || ||||||||||| | || || | | | | | || | | ||| Sbjct 426495 CCTTTTTTCCAGCCATAGAAATGCATCGATGATAACTTTGCAAAGTTAGCATTTTCCATA 426436 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 || ||||| | ||| ||| || || | | ||||| ||||||||||| | || Sbjct 426435 TGAATATTTAAAGACTGAGACTGGCAAATATATGGGCCCCTATCTGCAGCCATATCGATT 426376 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACT-CGCTTAATATCTTCTGGAAG 78956 | |||||||| ||| ||||||| |||||||||| | ||| | || | ||| Sbjct 426375 ACTGTCTTTTGCTTAATCTCCCAAACTGTTTTATAAAGTTCGCGGACGTCCTCCGGGATT 426316 Query 78957 GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014 || | |||| ||||| |||| || ||| || || | | || | | |||| | Sbjct 426315 GTAAGAATATTTTGAATACTTCCATTATTTGCAATGATATTTTGTTTAAGCCTGTCATCC 426256 Query 79015 CATAATTTTCTCTCGGTTAA--AACTC--TAAGGAGATGCGGATTAACTACTTGAAATTC 79070 |||| | | | | || || || | || | ||| ||||| ||||| |||||| Sbjct 426255 CATAG----CCCAAGTTCAAGCAAGTCATTGAGTAAATGAGGATTCACTACAAAAAATTC 426200 Query 79071 TCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATT 79130 ||||| | ||| || ||| || ||||| ||| ||||||| | ||| || || Sbjct 426199 ACCAGAAAGTACCCTACGATGATATATATTTGAAGTAAATGGTTCAAAACTTTCGTTGTT 426140 Query 79131 TCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAG 79190 || || ||||| | || || || || ||||| || || | | | ||| | || Sbjct 426139 ACCTAATATTTGCGAGGTAGACGCAGTAGGCATTGGAGCAATTAGAAGTGAATTACGGAG 426080 Query 79191 ACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGAC---GGGAC 79247 || || || | ||||| || || ||||| || ||||| |||| || Sbjct 426079 CCCATACTTAGAAATCCTTTCTTTAAGTGAATCCCAGTCGCAAAGCCCAGAATCAGGCTT 426020 Query 79248 AACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTC 79307 ||| ||| | ||| ||||||||||||| ||||| ||| ||| || | || ||||| Sbjct 426019 AACTCCCCACATGTCAAATTGTAGAATACCTTTACTCGCGGGTGACCCAGAATACGTTTC 425960 Query 79308 ATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGT 79367 ||| || || || ||||| || | || ||||| ||||| | || | |||||||| Sbjct 425959 ATACGGCCCATCTTTTTCTGCGAGCTCGCAACTAGCCTCGAGCGCCGCATAATAAATAAC 425900 Query 79368 TTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGGCTATCAAATGG-ATAATTTAAG 79425 ||| ||||||| |||||| | | | | ||||| | | ||| |||| ||| ||| Sbjct 425899 TTCAAAAATCTCCTTATTTAATTTCCTAGCCTTCTCTGAT-TCATATGGCATACG--AAG 425843 Query 79426 -AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 79484 | ||||| ||||| | ||||||||||||||| || | || | |||| | ||| Sbjct 425842 CATCATAAAGCAATCTGCAAGTCCTTGAACACCAATTCCAAGCGGGCGATGTTTTAGATT 425783 Query 79485 AGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCT 79544 || ||| | |||||| | || |||||| ||| | |||||| || | |||||| Sbjct 425782 TGAGTTTTTACATTCTGGGAGAGAATAATATCCGTGATCAACAATTTTGTTTAAATTCCT 425723 Query 79545 GACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCC---ATCTATTAC 79601 || ||| | || ||||||| || ||| || ||| | |||| | | Sbjct 425722 CGTAATAACTCTCGTAACTTCCTTTAACTTATCAAAGTCGAATGTTTTGTTATCTTTGTC 425663 Query 79602 AAACATGTTCA-ACG--CGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 79658 || | ||| | | | | || ||||| |||||||| || | ||||| || | Sbjct 425662 AACAAACTTCGGAAGACCAATGGACGCCAGGTTACAAACAGCAATTTCATTTGCGCTAGT 425603 Query 79659 ATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATT 79718 || | ||| ||||| ||||| | ||||| | ||| || || ||||||| || || Sbjct 425602 GTACTCTATAATTTCGGTGCATAAATTACTGGAAACAATAGTCCCCAAATTTTTCTGGTT 425543 Query 79719 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGA 79778 |||||| | || || ||||| || ||||| || || || |||||||| |||| Sbjct 425542 ACTCTTACTATTCGCAGCGTCCTTGTAGCAGATGAAAGGCGTTCCTGTTTCAATTTGAGC 425483 Query 79779 TTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGACTTGTATCT----CTTT 79833 || || || ||| | | || | ||||| || || || || | | Sbjct 425482 TTGTAGGATTAAAAACCAAA-GTTTCTGCGCCTTCAT---AGTTTTTCTTCCGCGGCCCT 425427 Query 79834 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCA 79893 || ||||||| | | ||||| | | ||||| || ||||||||||| | || || Sbjct 425426 GCT-TTTCGTACTCTTCATATAGTTTCTTAAACTCATCACCCCAAACATCTTGCAACCCC 425368 Query 79894 GGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAG 79953 ||||| || |||||||| | | ||| ||| || | || || | | |||||| Sbjct 425367 CTGCATTCATCCGGACACATAAGAGTCCAATCTTGGTCTTTCTCAACCCTCTCCATAAAT 425308 Query 79954 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTA 80013 |||||||||| |||||| || ||| || || | | ||| |||||| ||||| | Sbjct 425307 AGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGGCATCTCATCTCCTCTTTTCCATGA 425248 Query 80014 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 80073 |||||| | | || | ||| ||| || ||| ||||||||| ||||| || || || Sbjct 425247 TTCTTTCTTATTTCAATAAACTCCACAACATCTACATGCCACGGCTCCAAATAAATTGCA 425188 Query 80074 ATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 80133 || | ||| ||||| ||| || || || || |||||||| || | ||||||||| Sbjct 425187 ATCGCACCCTTGCGTTTCCCTCCACCTTGGTCAATATATCTAGCAGTATCATTATAAACG 425128 Query 80134 CTCAACATTGGAATAATACCATTGGATGTACCATTGGT-CCCGGAGATATAGCTTCCACT 80192 | ||||||||||| | ||||| || | |||||||| ||| || ||||| || | Sbjct 425127 CGTAACATTGGAATCAGTCCATTAGACCTTCCATTGGTACCCCGA-ATATACGAGCCCGT 425069 Query 80193 GGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 80252 | | ||||||||| | || | || | || || || | ||| || ||| || Sbjct 425068 TCCTCTAATATTACTCACTGCCACTCCAAGACCGCCGGCAGTCTTACTAATATTTGCACA 425009 Query 80253 TCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACA 80312 | | ||| ||| ||| | || || ||||| ||| || || | |||| |||||| Sbjct 425008 TTTTGTTAGCGTGTCAAAAATACCATCTATAGAATCCTCTGGTATTCTGAGTAAAAAACA 424949 Query 80313 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 80372 |||||||| | | ||| || | || || | ||||| | ||| || ||||| Sbjct 424948 AGATGACATTTGAGGTCTTGGAGTGCCGGAGTTGAAAAGCGTAGGTGTAGCATGGGTAAA 424889 Query 80373 CCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAAT 80432 | |||| || | || || || || || | || | || ||||| | ||| || Sbjct 424888 ATACTTTTGCGATAATAATTTATATGTTTCGAGTGCAGCCTCGATATCACCGCAATGTAT 424829 Query 80433 TCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTT 80492 || | || | ||||| | || || ||||| || || |||||||||| ||| | Sbjct 424828 ACCACAAGAAACTCTCATTAGAAGATGTTGTGGTCTCTCTACAATCTTGTTATCAATTCT 424769 Query 80493 CAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 80547 | | || || |||| |||||||| || ||||||| | ||| ||| ||| Sbjct 424768 GAGAAGATAGGACCTTTCTAAAGTTTTGAATGCAAAATAATCATATTCAAAATCT 424714 Score = 167 bits (184), Expect = 3e-36 Identities = 573/875 (65%), Gaps = 34/875 (4%) Strand=Plus/Plus Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 ||||||||| |||| ||||| || || | ||||| || ||||| ||||| |||| Sbjct 146810 CATAACTCCAGCCATTTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTG 146869 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 49775 | ||| ||| ||||| |||| || ||||| | |||||| |||||||| | | Sbjct 146870 GAGTGAAATAAGATCCATCCAATCGAAGGGATTAGAAACATTGTAAATTTTGGGGATATC 146929 Query 49776 CAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 49835 || || ||| | |||||| || |||||||| |||||| ||| | | | | || Sbjct 146930 CAGAGCAAAAAGGAGTCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGTT 146989 Query 49836 CATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGC 49895 |||||| ||||| | ||| ||||| | || |||||| | | ||| | || || Sbjct 146990 CATTCCAATAAGATCAACAGGAAGTGAGTCACAAAGAAAGTTTCTTTCTACATCAACAGC 147049 Query 49896 ATCTGTTATAATAGATCTAACGGTTTCTTCAC-TCGGTGGATGCAATAAATG---TTTAA 49951 |||| ||||| | || ||| | | ||| | | || | | ||| Sbjct 147050 TTCTGAGATAATTTGTTGTAC----TCTAGAAGTTGGTAGTTTATATTTAAGAGCTTTGT 147105 Query 49952 ACATCAAACATGCGAAATC-GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 | || || || || || || ||| || | || || || | ||||| ||||| || || Sbjct 147106 ATATTAAGCAAGCAAAGTCAGCA-TGTAATCCTTCATCACGGCTAATAAGTTCATTAGAG 147164 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG-ACCC 50069 || || ||||| ||||| || ||||||||||||||||||||||| | | |||| | || Sbjct 147165 AATGTAAGTCCAGGCATAAGTCCACGCTTTTTAAGCCAAAATATAG-CACAAAAGCTACC 147223 Query 50070 AGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT 50129 |||||| | ||||||||||| || || ||| || |||||| || || | || Sbjct 147224 AGAAAAAAGAATTCCTTCTACAGCACAGAATCCAATAATTCTCTCAGCAAAA---GATCT 147280 Query 50130 GTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 50186 || || ||||| || ||||| || || |||||||| || || || Sbjct 147281 TTCATTATTCATCCATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATATGAGA 147340 Query 50187 TATGGCATTAAAGAG-AT---AGtttttttCATTACTATCTTTAACATAAGTATCGATCA 50242 || || | ||| || || | || ||| ||| || ||| ||| | || || | Sbjct 147341 AATAGCCTCAAAAAGCATTTGACGTTCTTTTATT----TCAGTAATATATCTGTCAATTA 147396 Query 50243 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA-T 50301 | | ||| |||| |||||| | ||||| ||||| |||||| | || | ||| | Sbjct 147397 ACAAGGAATATGTTTCATTATGAATTTGCTCAATAGCCATTTGAAATGCATA-ATACATT 147455 Query 50302 CTAGCCTCGGTAATCTGCACTTCT-GTACAAAATCGTTCAGCTAAATTTTCATTCACTAT 50360 || || || | || || | |||| || |||| | |||| || ||||| | || || Sbjct 147456 CTTGCTTCTGGGATATGTATTTCTCTTAGGAAATTG-ACAGCCAAGTTTTCCATAACAAT 147514 Query 50361 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGT 50420 || ||||| || ||||| || || | || | ||| ||||||||| | || |||| | Sbjct 147515 ACCATCACTAGCAGCAAAGAAAGCTAGGACGTATTTAATAAAATGTCTCTC--AGGGTCT 147572 Query 50421 T--AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 50478 | || | | |||||| | |||||| | || || | ||||| |||||| Sbjct 147573 TTAAGACTTTCCCAATCTCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAACCCAAAAC 147632 Query 50479 GATGCCTCTGCCTTTTTATACATATTCCAGATGTC 50513 ||||| ||||| |||||||||||| ||| || || Sbjct 147633 GATGCTTCTGCTTTTTTATACATAAACCAAATATC 147667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268449843960