Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20ubiquitum_20[genbank_20GCA_5F001865345.1_202016- 11-03] 39 sequences; 8,970,213 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq30 260 2e-64 >seq30 Length=890313 Score = 260 bits (288), Expect = 2e-64 Identities = 1157/1817 (64%), Gaps = 32/1817 (2%) Strand=Plus/Minus Query 70836 TAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAG 70895 |||||| || ||||| ||||||| || |||| || || |||||||| | || Sbjct 426520 TAGATAATAAATGCCAGTTTTTAATCCTTTTTTCCAGCCATAGAAATGCATCGATGATAA 426461 Query 70896 TTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGC 70955 || | | || ||| || | || |||||||| | |||||| || || | | Sbjct 426460 CTTTGCAAAGTTAGCATTTTCCATATGAATATTTAAAGACTGAGACTGGCAAATATATGG 426401 Query 70956 TCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 71015 ||||| ||||||||||| | || | |||||||| ||| ||||||| |||||||| Sbjct 426400 GCCCCTATCTGCAGCCATATCGATTACTGTCTTTTGCTTAATCTCCCAAACTGTTTTATA 426341 Query 71016 AACT-CGCTTAATATCTTCTGGAAGGTTTG--TATTCTGAATGGATCCACCATCTGCAAT 71072 || | ||| | || | ||| || | |||| ||||| |||| || |||||| Sbjct 426340 AAGTTCGCGGACGTCCTCCGGGATTGTAAGAATATTTTGAATACTTCCATTATTTGCAAT 426281 Query 71073 AATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAA--AACTC--TAAGGA 71128 || | | ||| | | |||| ||||| | | | | || || || | || | Sbjct 426280 GATATTTTGTTTAAGCCTGTCATCCCATAG----CCCAAGTTCAAGCAAGTCATTGAGTA 426225 Query 71129 GATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGG 71188 ||||||||| ||||| |||||| ||||| | ||| |||||| || ||||| | Sbjct 426224 AATGAGGATTCACTACAAAAAATTCACCAGAAAGTACCCTACGATGATATATATTTGAAG 426165 Query 71189 TATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAG 71248 || | ||||| | || || || || || ||||| | || || ||||| ||||| | Sbjct 426164 TAAATGGTTCAAAACTTTCGTTGTTACCTAATATTTGCGAGGTAGACGCAGTAGGCATTG 426105 Query 71249 GTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCC 71308 | || | | || ||| | || |||| || | ||||| || || |||| Sbjct 426104 GAGCAATTAGAAGTGAATTACGGAGCCCATACTTAGAAATCCTTTCTTTAAGTGAATCCC 426045 Query 71309 AATTCCAAAGATCCGAT---GGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTAC 71365 | | ||||| | || || ||| || || |||| Sbjct 426044 AGTCGCAAAGCCCAGAATCAGGCTTAACTCCCCACATGTCAAATTGTAGAATACCTTTAC 425985 Query 71366 TAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCG 71425 | ||| ||| || | ||| || || || || || |||||||| || || || ||||| | Sbjct 425984 TCGCGGGTGACCCAGAATACGTTTCATACGGCCCATCTTTTTCTGCGAGCTCGCAACTAG 425925 Query 71426 CCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCC 71484 |||| | || |||||||||| ||| ||||||| |||||| | | | | |||| Sbjct 425924 CCTCGAGCGCCGCATAATAAATAACTTCAAAAATCTCCTTATTTAATTTCCTAGCCTTCT 425865 Query 71485 GGGCTATCAAATGG-ATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACGCCAA 71542 | | ||| |||| ||| ||| | ||||| ||||| | ||||||||| |||| Sbjct 425864 CTGAT-TCATATGGCATACG--AAGCATCATAAAGCAATCTGCAAGTCCTTGAACACCAA 425808 Query 71543 TACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 71602 | || | || | ||| | ||| || ||| | |||||| | || |||||| Sbjct 425807 TTCCAAGCGGGCGATGTTTTAGATTTGAGTTTTTACATTCTGGGAGAGAATAATATCCGT 425748 Query 71603 TATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAA 71662 ||| | |||||| || | ||| || || ||| | || ||||||| || || Sbjct 425747 GATCAACAATTTTGTTTAAATTCCTCGTAATAACTCTCGTAACTTCCTTTAACTTATCAA 425688 Query 71663 AATCAAATCTCCC---ATCTATTACAAACACGTTC--AAGGC-AACAGATGCCAGATTAC 71716 | || ||| | |||| | ||| | ||| ||| | || || ||||| |||| Sbjct 425687 AGTCGAATGTTTTGTTATCTTTGTCAACAAACTTCGGAAGACCAATGGACGCCAGGTTAC 425628 Query 71717 AAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACT 71776 |||| || | ||||| || | || | ||||||||| ||||| | |||||| | Sbjct 425627 AAACAGCAATTTCATTTGCGCTAGTGTACTCTATAATTTCGGTGCATAAATTACTGGAAA 425568 Query 71777 TGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAA 71836 || || || ||||||| || |||||||| | || || ||||| || || | Sbjct 425567 CAATAGTCCCCAAATTTTTCTGGTTACTCTTACTATTCGCAGCGTCCTTGTAGCAGATGA 425508 Query 71837 ACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTT 71895 | || || || |||||||| |||| || || || ||| | | || | ||||| Sbjct 425507 AAGGCGTTCCTGTTTCAATTTGAGCTTGTAGGATTAAAAACCAAA-GTTTCTGCGCCTTC 425449 Query 71896 ATTATATT-CTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTC 71954 || | || ||| | | || ||||||| | | ||||| | | ||||| || Sbjct 425448 ATAGTTTTTCTTCCGCGGCCCTGCT-TTTCGTACTCTTCATATAGTTTCTTAAACTCATC 425390 Query 71955 TCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATC 72014 |||||| ||| | || || ||||||| ||||||||| | | ||| ||| || Sbjct 425389 ACCCCAAACATCTTGCAACCCCCTGCATTCATCCGGACACATAAGAGTCCAATCTTGGTC 425330 Query 72015 ATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGT 72074 | | || | | |||||| |||||||||| |||||| || ||| || || | | Sbjct 425329 TTTCTCAACCCTCTCCATAAATAGATCAGGAACCCAAAGGGCAGGAAAGAGGTCACGGCA 425270 Query 72075 TCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 72134 ||| |||||| ||||| ||||||| | | || | ||| ||| || ||| ||| Sbjct 425269 TCTCATCTCCTCTTTTCCATGATTCTTTCTTATTTCAATAAACTCCACAACATCTACATG 425210 Query 72135 CCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTA 72194 |||||| ||||| || || || || | ||| ||||| ||| || || || || || Sbjct 425209 CCACGGCTCCAAATAAATTGCAATCGCACCCTTGCGTTTCCCTCCACCTTGGTCAATATA 425150 Query 72195 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGT 72254 |||||| || | ||||||||| | ||||||||||| | ||||| || |||||||| Sbjct 425149 TCTAGCAGTATCATTATAAACGCGTAACATTGGAATCAGTCCATTAGACCTTCCATTGGT 425090 Query 72255 -CCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTG 72313 ||| || ||||| || | | | |||||| || | || | || | || || | Sbjct 425089 ACCCCGA-ATATACGAGCCCGTTCCTCTAATATTACTCACTGCCACTCCAAGACCGCCGG 425031 Query 72314 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCAT 72373 | | ||| || ||| ||| | ||| ||| ||| | || || |||||| ||| | Sbjct 425030 CAGTCTTACTAATATTTGCACATTTTGTTAGCGTGTCAAAAATACCATCTATAGAATCCT 424971 Query 72374 CCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATA 72433 | || | |||| |||||| |||||||| | | ||| || | || || | Sbjct 424970 CTGGTATTCTGAGTAAAAAACAAGATGACATTTGAGGTCTTGGAGTGCCGGAGTTGAAAA 424911 Query 72434 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTG 72493 ||||| | ||| || ||||| | |||| || | || || || || || | || | Sbjct 424910 GCGTAGGTGTAGCATGGGTAAAATACTTTTGCGATAATAATTTATATGTTTCGAGTGCAG 424851 Query 72494 ATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTT 72553 || ||||| | |||||| || | || | ||||| | ||| || ||||| | Sbjct 424850 CCTCGATATCACCGCAATGTATACCACAAGAAACTCTCATTAGAAGATGTTGTGGTCTCT 424791 Query 72554 CAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAAT 72613 | || |||||||||| ||| | | | ||||| |||| |||||||| || |||||| Sbjct 424790 CTACAATCTTGTTATCAATTCTGAGAAGATAGGACCTTTCTAAAGTTTTGAATGCAAAAT 424731 Query 72614 AGTTGTATGAAAAGTCT 72630 | | ||| ||| ||| Sbjct 424730 AATCATATTCAAAATCT 424714 Score = 185 bits (204), Expect = 1e-41 Identities = 608/923 (66%), Gaps = 43/923 (5%) Strand=Plus/Plus Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGAGA---CATAACTCCCATTTT 41775 ||| || || ||||||| ||| | | ||| |||||| ||||||||| | Sbjct 146765 TTAGAATTCTGCATCTAAGTCAAACTTTTGGTCATCTTGATTAACCATAACTCCAGCCAT 146824 Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835 ||| ||||| || || | ||||| || ||||| || || |||| | ||| ||| || Sbjct 146825 TTGATATTCTCCGACTCTCTTTTCAAAGAAATTGGTTTTACCTTGGAGTGAAATAAGATC 146884 Query 41836 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 41895 ||| |||| || ||||| | |||||| |||||||| | ||| || ||| | Sbjct 146885 CATCCAATCGAAGGGATTAGAAACATTGTAAATTTTGGGGATATCCAGAGCAAAAAGGAG 146944 Query 41896 TCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 41955 |||||| || | ||||| |||||| ||| | | | | |||||||| ||||| | Sbjct 146945 TCTATCAGCTACAAATTCAATATATTGAGCCATAAGTCTAGAGTTCATTCCAATAAGATC 147004 Query 41956 AACTGGAAG--AGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013 ||| ||||| || |||| |||||| | | ||| | | || || |||| ||||| Sbjct 147005 AACAGGAAGTGAGTCACA--AAGAAAGTTTCTTTCTACATCAACAGCTTCTGAGATAATT 147062 Query 42014 GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATG---TTTAAACATCAAACATGCG 42070 | |||| | | | ||| | | || | | ||| | || || || || Sbjct 147063 TGTTGTACTCTAGA---AGTTGGTAGTTTATATTTAAGAGCTTTGTATATTAAGCAAGCA 147119 Query 42071 AAATC-GCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 42129 || || ||| || | || ||||| | ||||| | ||| || || || || ||||| || Sbjct 147120 AAGTCAGCA-TGTAATCCTTCATCACGGCTAATAAGTTCATTAGAGAATGTAAGTCCAGG 147178 Query 42130 CATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAAGATTC 42188 ||| || ||||||||||||||||||||||||| | |||| | | |||||||| | |||| Sbjct 147179 CATAAGTCCACGCTTTTTAAGCCAAAATATAG-CACAAAAGCTACCAGAAAAAAGAATTC 147237 Query 42189 CTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC---ATGTATCC 42245 ||||||| || || |||||| |||||| || || | || || || |||| Sbjct 147238 CTTCTACAGCACAGAATCCAATAATTCTCTCAGCAAAA---GATCTTTCATTATTCATCC 147294 Query 42246 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 42305 | || ||||| || || |||||||| || || || || || | ||| | Sbjct 147295 ATTTAGTTGCCCATTCTGCTTTCTTTTTAACTGCAGAAATATGAGAAATAGCCTCAAAAA 147354 Query 42306 G-AT---AGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 | || | || ||| ||| || ||| |||| | || || || | ||| || Sbjct 147355 GCATTTGACGTTCTTTTATT----TCAGTAATATATCTGTCAATTAACAAGGAATATGTT 147410 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA-TCTGGCCTCGGTAAC 42420 || |||||| | ||||| ||||| |||||| | || | ||| ||| || || | | Sbjct 147411 TCATTATGAATTTGCTCAATAGCCATTTGAAATGCATA-ATACATTCTTGCTTCTGGGAT 147469 Query 42421 CTGTACTTCT-GTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTG 42479 |||| |||| || |||| | |||| || ||||| | || || || ||||| || | Sbjct 147470 ATGTATTTCTCTTAGGAAATTG-ACAGCCAAGTTTTCCATAACAATACCATCACTAGCAG 147528 Query 42480 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTT--AATTTATTCCA 42537 |||| || || | || | ||| ||||||| | | || ||| || | | | ||| Sbjct 147529 CAAAGAAAGCTAGGACGTATTTAATAAAATGTCTCTC--AGGGTCTTTAAGACTTTCCCA 147586 Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTC--TACCGTCCAAAATGATGCTTCTGCC 42595 ||| | |||||| | || || | ||||| || | |||||| ||||||||||| Sbjct 147587 ATCTCTAGTATCTTGACTTAAGTCAATCTCTTCAGTAAC--CCAAAACGATGCTTCTGCT 147644 Query 42596 TTTTTATACATATTCCAGATATC 42618 |||||||||||| ||| ||||| Sbjct 147645 TTTTTATACATAAACCAAATATC 147667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138872819640